| /dports/biology/mummer/mummer-4.0.0beta2-2-g277dac5/src/kurtz/streesrc/ |
| H A D | overmax.c | 18 Uint depth, headposition, *btptr, *largeptr, distance; in overallstree() local
32 headposition = GETHEADPOS(btptr); in overallstree()
33 processnode(stree,btptr,depth,headposition,info); in overallstree()
40 headposition = GETHEADPOS(largeptr); in overallstree()
47 processnode(stree,btptr,depth,headposition,info); in overallstree()
57 Uint *btptr, *nextptr, *largeptr, depth, headposition, distance; in overmaximalstree() local
70 headposition = GETHEADPOS(btptr); in overmaximalstree()
77 headposition = GETHEADPOS(largeptr) - distance; in overmaximalstree()
80 if(!ISIBITSET(stree->nonmaximal,headposition)) in overmaximalstree()
83 (Showuint) headposition); in overmaximalstree()
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| H A D | linkloc.c | 18 node, distance = 0, prefixlen, headposition, tmpnodedepth; in rescanstree() local
26 headposition = 0; in rescanstree()
29 GETBOTH(nodedepth,headposition,nodeptr); in rescanstree()
33 loc->locstring.start = headposition; in rescanstree()
60 GETONLYHEADPOS(headposition,nodeptr); in rescanstree()
61 loc->firstptr = stree->text + headposition; in rescanstree()
87 GETONLYHEADPOS(headposition,nodeptr); in rescanstree()
88 loc->firstptr = stree->text + (nodedepth + headposition); in rescanstree()
103 loc->locstring.start = headposition; in rescanstree()
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| H A D | streedbg.c | 77 headposition, suffixlink; in showtable() local
149 GETBOTH(depth,headposition,btptr); in showtable()
231 GETBOTH(depth,headposition,btptr); in checkstree()
239 if(headposition == leafindex) in checkstree()
316 GETBOTH(depth,headposition,btptr); in checkstree()
317 if(!ISBRANCHUSED(headposition)) in checkstree()
320 (Showuint) headposition); in checkstree()
388 depth, headposition; in showsubtree() local
391 GETBOTH(depth,headposition,btptr); in showsubtree()
504 s->start = branchinfo.headposition; in loc2stringstree()
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| H A D | scanpref.c | 45 headposition = 0; in scanprefixfromnodestree()
48 GETBOTH(nodedepth,headposition,nodeptr); in scanprefixfromnodestree()
52 loc->locstring.start = headposition; in scanprefixfromnodestree()
103 GETONLYHEADPOS(headposition,nodeptr); in scanprefixfromnodestree()
104 leftborder = stree->text + headposition; in scanprefixfromnodestree()
195 loc->locstring.start = headposition; in scanprefixfromnodestree()
319 headposition = 0; in findprefixpathfromnodestree()
326 loc->locstring.start = headposition; in findprefixpathfromnodestree()
377 GETONLYHEADPOS(headposition,nodeptr); in findprefixpathfromnodestree()
469 loc->locstring.start = headposition; in findprefixpathfromnodestree()
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| H A D | addleafcount.c | 62 cstate->stree->leafcounts[branchinfo.headposition] = *(father+1); in processbranch2()
91 return stree->leafcounts[branchinfo.headposition]; in getleafcountstree()
108 Uint headposition, in checkleafcount() argument
123 if(stree->leafcounts[headposition] != lc) in checkleafcount()
127 (Showuint) stree->leafcounts[headposition], in checkleafcount()
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| H A D | construct.c | 158 Uint headposition) in setdepthheadposition() argument
164 (Showuint) headposition); in setdepthheadposition()
265 Uint headposition) in setdepthheadposition() argument
271 (Showuint) headposition); in setdepthheadposition()
280 *(stree->nextfreebranch+3) = headposition; in setdepthheadposition()
599 GETONLYHEADPOS(headposition,nodeptr); in rescan()
656 distance = 0, prevnode, prefixlen, headposition; in scanprefix() local
685 leftborder = stree->text + headposition; in scanprefix()
737 GETONLYHEADPOS(headposition,nodeptr); in scanprefix()
990 GETONLYHEADPOS(headposition,stree->headnode);\
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| H A D | access.c | 141 branchinfo->headposition = stree->nextfreeleafnum - distance; in getbranchinfostree()
152 branchinfo->headposition = GETHEADPOS(btptr); in getbranchinfostree()
164 branchinfo->headposition = GETHEADPOS(largeptr) - distance; in getbranchinfostree()
210 str->start = branchinfo.headposition; in getheadstringstree()
225 str->start = branchinfo.headposition; in getheadstringstree()
244 showchar(stree->text[branchinfo.headposition + i],info); in showpathstree()
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| H A D | streetyp.h | 45 Uint headposition, // the head position of the branching node member
210 Uint depth, headposition; member
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| /dports/biology/mummer/mummer-4.0.0beta2-2-g277dac5/src/kurtz/mm3src/ |
| H A D | findmaxmat.c | 126 nodestring = maxmatchinfo->stree->text + branchinfo.headposition; in checkquerycommonprefix()
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