Home
last modified time | relevance | path

Searched refs:hitlist_max (Results 1 – 7 of 7) sorted by relevance

/dports/net/axa/axa-2.2.0/axalib/
H A Dtrie.c917 int hitlist_max, newlen; in hitlist_add() local
932 if (roots->hitlist_max == 0) in hitlist_add()
933 hitlist_max = 10; in hitlist_add()
935 hitlist_max = roots->hitlist_max; in hitlist_add()
938 AXA_ASSERT(hitlist->len < hitlist_max); in hitlist_add()
940 if (newlen > hitlist_max) in hitlist_add()
941 newlen = hitlist_max; in hitlist_add()
/dports/net/axa/axa-2.2.0/axa/
H A Dtrie.h155 int hitlist_max; /**< hit array limit; default 10 */ member
/dports/biology/ncbi-toolkit/ncbi/tools/
H A Dmblast.c4020 Int4 hitlist_count, hitlist_max, hspmax, high_score=0, retval; in MegaBlastSaveCurrentHitlist() local
4200 hitlist_max = result_struct->hitlist_max; in MegaBlastSaveCurrentHitlist()
4204 if (hitlist_count == hitlist_max) in MegaBlastSaveCurrentHitlist()
4214 if (hitlist_count == hitlist_max) { in MegaBlastSaveCurrentHitlist()
4254 if (hitlist_count == hitlist_max) { in MegaBlastSaveCurrentHitlist()
4256 if (results[hitlist_max-1]->seqalign) in MegaBlastSaveCurrentHitlist()
4257 SeqAlignSetFree(results[hitlist_max-1]->seqalign); in MegaBlastSaveCurrentHitlist()
4258 results[hitlist_max-1] = in MegaBlastSaveCurrentHitlist()
4259 BLASTResultHitlistFreeEx(search, results[hitlist_max-1]); in MegaBlastSaveCurrentHitlist()
4263 if (hitlist_max > 1) in MegaBlastSaveCurrentHitlist()
[all …]
H A Drpsutil.c792 Int4 hitlist_max; in RPSubstituteQueryLookup() local
816 hitlist_max = search->result_struct->hitlist_max; in RPSubstituteQueryLookup()
831 …search->result_struct = BLASTResultsStructNew(hitlist_max, search->pbp->max_pieces, search->pbp->h… in RPSubstituteQueryLookup()
1365 for(index = 0; index < result_struct_new->hitlist_max; index++) { in RPSAlignTraceBack()
1568 for(index = 0; index < result_struct_new->hitlist_max; index++) { in RPS_FIX()
H A Dblast.c9913 hitlist_max = result_struct->hitlist_max; in BlastSaveCurrentHitlist()
9925 if (hitlist_count == hitlist_max) in BlastSaveCurrentHitlist()
9935 if (hitlist_count == hitlist_max) in BlastSaveCurrentHitlist()
10059 if (hitlist_count == hitlist_max) in BlastSaveCurrentHitlist()
10061 BlastFreeHeap(search, results[hitlist_max-1]); in BlastSaveCurrentHitlist()
10062 if (results[hitlist_max-1]->seqalign) in BlastSaveCurrentHitlist()
10063 SeqAlignSetFree(results[hitlist_max-1]->seqalign); in BlastSaveCurrentHitlist()
10064 results[hitlist_max-1] = BLASTResultHitlistFreeEx(search, results[hitlist_max-1]); in BlastSaveCurrentHitlist()
10068 if (hitlist_max > 1) in BlastSaveCurrentHitlist()
10115 if( hitlist_max > 1 ) in BlastSaveCurrentHitlist()
[all …]
H A Dblastdef.h1678 hitlist_max, /* Length of results array. */ member
H A Dblastutl.c2619 Int4 hitlist_max; in BlastTwoSequencesCoreEx() local
2626 hitlist_max = search->result_struct->hitlist_max; in BlastTwoSequencesCoreEx()
2629 search->result_struct = BLASTResultsStructNew(hitlist_max, in BlastTwoSequencesCoreEx()
4562 Int4 hitlist_max; in BioseqBlastEngineCore() local
4591 hitlist_max = search->result_struct->hitlist_max; in BioseqBlastEngineCore()
4593 …search->result_struct = BLASTResultsStructNew(hitlist_max, search->pbp->max_pieces, search->pbp->h… in BioseqBlastEngineCore()
6527 for (index=0; index<result_struct->hitlist_max; index++) in BLASTResultsStructDelete()
6566 new->hitlist_max = results_size; in BLASTResultsStructNew()