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Searched refs:hwe_level (Results 1 – 5 of 5) sorted by relevance

/dports/biology/gemma/GEMMA-0.98.3/src/
H A Dgemma_io.h65 const double &miss_level, const double &hwe_level,
74 const double &hwe_level, const double &r2_level,
H A Dparam.cpp97 maf_level(0.01), hwe_level(0), r2_level(0.9999), l_min(1e-5), l_max(1e5), in PARAM()
283 snpInfo, maf_level, miss_level, hwe_level, r2_level, in ReadFiles()
317 maf_level, miss_level, hwe_level, r2_level, mapRS2chr, in ReadFiles()
371 snpInfo, maf_level, miss_level, hwe_level, r2_level, in ReadFiles()
423 maf_level, miss_level, hwe_level, r2_level, mapRS2chr, in ReadFiles()
535 if (hwe_level > 1) { in CheckParam()
537 << "current value = " << hwe_level << endl; in CheckParam()
H A Dparam.h165 double hwe_level; variable
H A Dgemma_io.cpp638 const double &miss_level, const double &hwe_level, in ReadFile_geno() argument
812 if (hwe_level != 0 && maf_level != -1) { in ReadFile_geno()
813 if (CalcHWE(n_0, n_2, n_1) < hwe_level) { in ReadFile_geno()
863 const double &hwe_level, const double &r2_level, in ReadFile_bed() argument
1005 if (hwe_level != 0 && maf_level != -1) { in ReadFile_bed()
1006 if (CalcHWE(n_0, n_2, n_1) < hwe_level) { in ReadFile_bed()
H A Dgemma.cpp1106 cPar.hwe_level = atof(str.c_str()); in Assign()