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Searched refs:i_matrix (Results 1 – 25 of 32) sorted by relevance

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/dports/biology/seaview/seaview/
H A Dtbe.cxx31 short unsigned** i_matrix; in TBE_Compute() local
61 i_matrix, c_matrix, in TBE_Compute()
65 i_matrix, c_matrix, in TBE_Compute()
122 free((*i_matrix)[i]); in Free_TBE_Matrices()
126 free((*i_matrix)); in Free_TBE_Matrices()
199 …i_matrix[edge_id][boot_edge_id] = i_matrix[edge_id][boot_edge_id] || i_matrix[next_edge_id][boot_e… in Update_IC_Ref_Tree()
213 …i_matrix[edge_id][boot_edge_id] = i_matrix[edge_id][boot_edge_id] || i_matrix[next_edge_id][boot_e… in Update_IC_Ref_Tree()
228 …i_matrix[edge_id][boot_edge_id] = i_matrix[edge_id][boot_edge_id] || i_matrix[next_edge_id][boot_e… in Update_IC_Ref_Tree()
279 i_matrix[i][boot_edge_id] += i_matrix[i][next_boot_edge_id]; in Update_IC_Boot_Tree()
288 i_matrix[i][boot_edge_id] += i_matrix[i][next_boot_edge_id]; in Update_IC_Boot_Tree()
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H A Dtbe.h26 void Alloc_TBE_Matrices(int n_otu, short unsigned*** i_matrix,
31 void Free_TBE_Matrices(int n_otu, short unsigned*** i_matrix, short unsigned*** c_matrix,
38 short unsigned** i_matrix, short unsigned** c_matrix, int* cluster_sizes,
42 short unsigned** i_matrix, short unsigned** c_matrix, int* cluster_sizes,
46 TBE_Branch *my_br, short unsigned** i_matrix, short unsigned** c_matrix,
52 short unsigned** i_matrix, short unsigned** c_matrix,
/dports/biology/phyml/phyml-3.3.20200621/src/
H A Dtbe.c18 short unsigned** i_matrix, short unsigned** c_matrix, int* cluster_sizes){ in Update_IC_Ref_Tree() argument
46 i_matrix[edge_id][boot_edge_id] = 0; in Update_IC_Ref_Tree()
50 i_matrix[edge_id][boot_edge_id] = 1; in Update_IC_Ref_Tree()
65 i_matrix[edge_id][boot_edge_id] = 0; in Update_IC_Ref_Tree()
79 …i_matrix[edge_id][boot_edge_id] = i_matrix[edge_id][boot_edge_id] || i_matrix[next_edge_id][boot_e… in Update_IC_Ref_Tree()
91 short unsigned** i_matrix, short unsigned** c_matrix, int* cluster_sizes) { in Update_All_IC_Ref_Tree() argument
113 t_edge *my_br, short unsigned** i_matrix, short unsigned** c_matrix, in Update_IC_Boot_Tree() argument
139 i_matrix, c_matrix, hamming, min_dist, min_dist_edge, cluster_sizes); in Update_IC_Boot_Tree()
141 i_matrix[i][boot_edge_id] += i_matrix[i][next_boot_edge_id]; in Update_IC_Boot_Tree()
153 - i_matrix[i][boot_edge_id]; /* #taxa in the intersection of the two clusters */ in Update_IC_Boot_Tree()
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H A Dtbe.h20 short unsigned** i_matrix, short unsigned** c_matrix, int* cluster_sizes);
22 short unsigned** i_matrix, short unsigned** c_matrix, int* cluster_sizes);
24 t_edge *my_br, short unsigned** i_matrix, short unsigned** c_matrix,
28 short unsigned** i_matrix, short unsigned** c_matrix,
H A Dmake.h83 void Alloc_TBE_Matrices(int n_otu, short unsigned*** i_matrix, short unsigned*** c_matrix,short un…
H A Dfree.h92 void Free_TBE_Matrices(int n_otu, short unsigned*** i_matrix, short unsigned*** c_matrix,
H A Dfree.c1484 void Free_TBE_Matrices(int n_otu, short unsigned*** i_matrix, short unsigned*** c_matrix, in Free_TBE_Matrices() argument
1491 free((*i_matrix)[i]); in Free_TBE_Matrices()
1495 free((*i_matrix)); in Free_TBE_Matrices()
H A Dmake.c1708 void Alloc_TBE_Matrices(int n_otu, short unsigned*** i_matrix, short unsigned*** c_matrix,short uns… in Alloc_TBE_Matrices() argument
1715 …(*i_matrix) = (short unsigned**) malloc(nb_edges*sizeof(short unsigned*)); /* matrix of cardinals … in Alloc_TBE_Matrices()
1719 (*i_matrix)[i] = (short unsigned*) malloc(nb_edges*sizeof(short unsigned)); in Alloc_TBE_Matrices()
/dports/biology/iqtree/IQ-TREE-2.0.6/booster/
H A Dtest.c355 update_all_i_c_post_order_ref_tree(ref_tree, swap_tree, i_matrix, c_matrix); in test_transfer_1()
367 free(i_matrix[i]); in test_transfer_1()
371 free(i_matrix); in test_transfer_1()
442 free(i_matrix[i]); in test_transfer_2()
446 free(i_matrix); in test_transfer_2()
494 update_all_i_c_post_order_ref_tree(ref_tree, swap_tree, i_matrix, c_matrix); in test_transfer_3()
512 update_all_i_c_post_order_ref_tree(ref_tree, swap_tree, i_matrix, c_matrix); in test_transfer_3()
525 free(i_matrix[i]); in test_transfer_3()
529 free(i_matrix); in test_transfer_3()
660 free(i_matrix[i]); in test_transfer_4()
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H A Dbooster.c103 …s_ref, int nb_edges_boot, short unsigned*** c_matrix, short unsigned*** i_matrix, short unsigned**… in reset_matrices() argument
108 …(*i_matrix) = (short unsigned**) malloc(nb_edges_ref*sizeof(short unsigned*)); /* matrix of cardin… in reset_matrices()
112 (*i_matrix)[i] = (short unsigned*) malloc(nb_edges_boot*sizeof(short unsigned)); in reset_matrices()
118 void free_matrices(int nb_edges_ref, short unsigned*** c_matrix, short unsigned*** i_matrix, short … in free_matrices() argument
122 free((*i_matrix)[i]); in free_matrices()
126 free((*i_matrix)); in free_matrices()
414 short unsigned** i_matrix; in tbe() local
461 … reset_matrices(n, m, max_branches_boot, &c_matrix, &i_matrix, &hamming, &min_dist,&min_dist_edge); in tbe()
467 update_all_i_c_post_order_ref_tree(ref_tree, alt_tree, i_matrix, c_matrix); in tbe()
468 …update_all_i_c_post_order_boot_tree(ref_tree, alt_tree, i_matrix, c_matrix, hamming, min_dist, min… in tbe()
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H A Dtree.h261 …* ref_tree, Node* orig, Node* target, Tree* boot_tree, short unsigned** i_matrix, short unsigned**…
262 void update_all_i_c_post_order_ref_tree(Tree* ref_tree, Tree* boot_tree, short unsigned** i_matrix,…
264 …* ref_tree, Tree* boot_tree, Node* orig, Node* target, short unsigned** i_matrix, short unsigned**…
265 void update_all_i_c_post_order_boot_tree(Tree* ref_tree, Tree* boot_tree, short unsigned** i_matrix…
H A Dtree.c1767 i_matrix[edge_id][j] = 0; in update_i_c_post_order_ref_tree()
1771 i_matrix[edge_id][j] = 1; in update_i_c_post_order_ref_tree()
1785 i_matrix[edge_id][j] = 0; in update_i_c_post_order_ref_tree()
1791 …update_i_c_post_order_ref_tree(ref_tree, target, target->neigh[dir], boot_tree, i_matrix, c_matrix… in update_i_c_post_order_ref_tree()
1796 i_matrix[edge_id][j] = i_matrix[edge_id][j] || i_matrix[edge_id2][j]; in update_i_c_post_order_ref_tree()
1814 …i++) update_i_c_post_order_ref_tree(ref_tree, root, root->neigh[i], boot_tree, i_matrix, c_matrix); in update_all_i_c_post_order_ref_tree()
1845 for (i=0; i < ref_tree->nb_edges; i++) i_matrix[i][edge_id] = c_matrix[i][edge_id] = 0; in update_i_c_post_order_boot_tree()
1851 i_matrix, c_matrix, hamming, min_dist, min_dist_edge); in update_i_c_post_order_boot_tree()
1853 i_matrix[i][edge_id] += i_matrix[i][edge_id2]; in update_i_c_post_order_boot_tree()
1865 - i_matrix[i][edge_id]; /* #taxa in the intersection of the two clusters */ in update_i_c_post_order_boot_tree()
[all …]
/dports/astro/p5-Starlink-AST/Starlink-AST-1.05/ast/
H A Dmatrixmap.c628 this->i_matrix = (double *) astFree( (void *)( this->i_matrix ) ); in CompressMatrix()
740 this->i_matrix = (double *) astFree( (void *)( this->i_matrix ) ); in CompressMatrix()
1002 this->i_matrix = imat; in ExpandMatrix()
2640 matrix = mm->i_matrix; in MatPermSwap()
3943 matrix = map->i_matrix; in Rate()
4388 matrix = map->i_matrix; in Transform()
4680 out->i_matrix = NULL; in Copy()
4709 if( in->i_matrix ){ in Copy()
4710 out->i_matrix = (double *) astStore( NULL, (void *) in->i_matrix, in Copy()
4717 out->i_matrix = (double *) astFree( (void *) out->i_matrix ); in Copy()
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H A Dmatrixmap.h182 double *i_matrix; /* Pointer to inverse matrix */ member
/dports/science/py-pymol/pymol-open-source-2.4.0/layer1/
H A DPyMOLObject.cpp1407 if(i_matrix) { in ObjectStatePushAndApplyMatrix()
1418 matrix[0] = i_matrix[0]; in ObjectStatePushAndApplyMatrix()
1419 matrix[1] = i_matrix[4]; in ObjectStatePushAndApplyMatrix()
1420 matrix[2] = i_matrix[8]; in ObjectStatePushAndApplyMatrix()
1421 matrix[3] = i_matrix[12]; in ObjectStatePushAndApplyMatrix()
1422 matrix[4] = i_matrix[1]; in ObjectStatePushAndApplyMatrix()
1423 matrix[5] = i_matrix[5]; in ObjectStatePushAndApplyMatrix()
1424 matrix[6] = i_matrix[9]; in ObjectStatePushAndApplyMatrix()
1425 matrix[7] = i_matrix[13]; in ObjectStatePushAndApplyMatrix()
1426 matrix[8] = i_matrix[2]; in ObjectStatePushAndApplyMatrix()
[all …]
/dports/science/InsightToolkit/ITK-5.0.1/Modules/ThirdParty/VNL/src/vxl/core/vnl/tests/
H A Dtest_complexify.cxx82 vnl_matrix<ValueType> i_matrix(length,length,im); in test_complexify_instance() local
94 = vnl_complexify(r_matrix,i_matrix); in test_complexify_instance()
104 i_matrix = vnl_real(c_matrix); in test_complexify_instance()
109 TEST("vnl_matrix vnl_real",re,i_matrix.get(r,c)); in test_complexify_instance()
/dports/misc/vxl/vxl-3.3.2/core/vnl/tests/
H A Dtest_complexify.cxx76 vnl_matrix<ValueType> i_matrix(length, length, im); in test_complexify_instance() local
86 c_matrix = vnl_complexify(r_matrix, i_matrix); in test_complexify_instance()
96 i_matrix = vnl_real(c_matrix); in test_complexify_instance()
101 TEST("vnl_matrix vnl_real", re, i_matrix.get(r, c)); in test_complexify_instance()
/dports/multimedia/vlc/vlc-3.0.16/modules/demux/mp4/
H A Dlibmp4.c708 MP4_GET4BYTES( p_box->data.p_mvhd->i_matrix[i] ); in MP4_ReadBox_mvhd()
1228 int32_t *matrix = p_box->data.p_tkhd->i_matrix; in MP4_ReadBox_tkhd()
1270 p_box->data.p_tkhd->i_matrix[0], in MP4_ReadBox_tkhd()
1271 p_box->data.p_tkhd->i_matrix[1], in MP4_ReadBox_tkhd()
1272 p_box->data.p_tkhd->i_matrix[2], in MP4_ReadBox_tkhd()
1273 p_box->data.p_tkhd->i_matrix[3], in MP4_ReadBox_tkhd()
1274 p_box->data.p_tkhd->i_matrix[4], in MP4_ReadBox_tkhd()
1275 p_box->data.p_tkhd->i_matrix[5], in MP4_ReadBox_tkhd()
1276 p_box->data.p_tkhd->i_matrix[6], in MP4_ReadBox_tkhd()
1277 p_box->data.p_tkhd->i_matrix[7], in MP4_ReadBox_tkhd()
[all …]
H A Dlibmp4.h477 int32_t i_matrix[9]; member
503 int32_t i_matrix[9]; member
/dports/misc/cheat/cheat-4.2.2/vendor/github.com/alecthomas/chroma/lexers/s/
H A Dscilab.go25 …`%i_i__EObj`, `%i_j__EObj`, `%i_k__EObj`, `%i_l__EObj`, `%i_m__EObj`, `%i_matrix`, `%i_max`, `%i_m…
/dports/misc/cheat/cheat-4.2.2/vendor/github.com/alecthomas/chroma/chroma-0.9.1/lexers/s/
H A Dscilab.go25 …`%i_i__EObj`, `%i_j__EObj`, `%i_k__EObj`, `%i_l__EObj`, `%i_m__EObj`, `%i_matrix`, `%i_max`, `%i_m…
/dports/www/gitlab-workhorse/gitlab-foss-0a901d60f8ae4a60c04ae82e6e9c3a03e9321417/workhorse/vendor/github.com/alecthomas/chroma/lexers/s/
H A Dscilab.go21 …`%i_i__EObj`, `%i_j__EObj`, `%i_k__EObj`, `%i_l__EObj`, `%i_m__EObj`, `%i_matrix`, `%i_max`, `%i_m…
/dports/devel/gh/cli-2.4.0/vendor/github.com/alecthomas/chroma/lexers/s/
H A Dscilab.go21 …`%i_i__EObj`, `%i_j__EObj`, `%i_k__EObj`, `%i_l__EObj`, `%i_m__EObj`, `%i_matrix`, `%i_max`, `%i_m…
/dports/www/gitea/gitea-1.16.5/vendor/github.com/alecthomas/chroma/lexers/s/
H A Dscilab.go25 …`%i_i__EObj`, `%i_j__EObj`, `%i_k__EObj`, `%i_l__EObj`, `%i_m__EObj`, `%i_matrix`, `%i_max`, `%i_m…
/dports/sysutils/chezmoi/chezmoi-2.9.3/vendor/github.com/alecthomas/chroma/lexers/s/
H A Dscilab.go25 …`%i_i__EObj`, `%i_j__EObj`, `%i_k__EObj`, `%i_l__EObj`, `%i_m__EObj`, `%i_matrix`, `%i_max`, `%i_m…

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