| /dports/biology/canu/canu-2.2/src/overlapBasedTrimming/ |
| H A D | trimReads.C | 47 uint32 UNUSED(ibgn), in enforceMaximumClearRange() argument
284 uint32 ibgn = outClr->bgn(id); in main() local
290 uint32 fbgn = ibgn; in main()
330 ibgn, iend, fbgn, fend, in main()
372 ibgn, iend, in main()
386 ibgn, iend, in main()
393 else if ((ibgn == fbgn) && in main()
399 ibgn, iend, in main()
413 assert(ibgn <= fbgn); in main()
416 if (fbgn - ibgn > 0) trim5 += fbgn - ibgn; in main()
[all …]
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| H A D | trimReads-bestEdge.C | 34 uint32 ibgn, in bestEdge() argument
44 fbgn = ibgn; in bestEdge()
59 …if (largestCovered(ovl, ovlLen, readID, readLen, ibgn, iend, lbgn, lend, logMsg, errorValue, minOv… in bestEdge()
89 assert(ibgn <= tbgn); in bestEdge()
110 if ((tbgn == ibgn) && in bestEdge()
189 uint32 tbgn = ibgn + ovl[i].a_bgn(); in bestEdge()
190 uint32 tend = ibgn + ovl[i].a_end(); in bestEdge()
262 uint32 tbgn = ibgn + ovl[i].a_bgn(); in bestEdge()
263 uint32 tend = ibgn + ovl[i].a_end(); in bestEdge()
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| H A D | trimReads.H | 48 uint32 ibgn,
63 uint32 ibgn,
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| H A D | trimReads-largestCovered.C | 28 uint32 UNUSED(ibgn), in largestCovered() argument
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| /dports/biology/psi88/psi88/src/ |
| H A D | psplot.f | 64 call strbnd (temp,ibgn,iend)
65 iadd = iend-ibgn
66 bigstr(nstr:nstr+iadd) = temp(ibgn:iend)
80 call strbnd (temp,ibgn,iend)
81 iadd = iend-ibgn
82 bigstr(nstr:nstr+iadd) = temp(ibgn:iend)
98 call strbnd (s,ibgn,iend)
132 subroutine strbnd (strng,ibgn,iend) argument
137 integer ibgn,iend
143 20 ibgn = i
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| /dports/science/InsightToolkit/ITK-5.0.1/Modules/Numerics/FEM/src/ |
| H A D | dsrc2c.c | 4799 ibgn = ia[0] - 1; in pbeta_()
4810 ibgn = ia[k] - 1; in pbeta_()
4823 ibgn = ia[*n-1] - 1; in pbeta_()
4841 if (ibgn >= iend) in pbeta_()
5275 ibgn = ia[i] - 1; in permat_()
5291 ibgn = 0; in permat_()
5295 ibgn = k; in permat_()
5363 qsort_(&k, &ja[ibgn], &a[ibgn], &ier); in permat_()
5850 ibgn = first + 1; in prbndx_()
5873 ibgn = ia[k] - 1; in prbndx_()
[all …]
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| /dports/biology/canu/canu-2.2/src/utgcns/libNNalign/ |
| H A D | NNalgorithm.C | 163 int32 ibgn = 1; in alignLinker() local
170 for (int32 i=ibgn-1; i<=iend+1; i++) { in alignLinker()
195 ibgn, jbgn, iend, jend, ahang, bhang, lenA, lenB); in alignLinker()
198 for (int32 i=ibgn; i<=iend; i++) { in alignLinker()
325 for (int32 i=ibgn, j=jend; i<=iend; i++) { in alignLinker()
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| /dports/devel/wasi-libcxx/llvm-project-13.0.1.src/flang/lib/Lower/ |
| H A D | PFTBuilder.cpp | 1266 auto ibgn = iter->first; in analyzeAliases() local
1267 auto ilen = iter->second - ibgn + 1; in analyzeAliases()
1269 lower::pft::Variable::Interval interval(ibgn, ilen); in analyzeAliases()
1272 << "interval [" << ibgn << ".." << ibgn + ilen in analyzeAliases()
1277 LLVM_DEBUG(llvm::dbgs() << "interval [" << ibgn << ".." << ibgn + ilen in analyzeAliases()
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| /dports/devel/llvm-devel/llvm-project-f05c95f10fc1d8171071735af8ad3a9e87633120/flang/lib/Lower/ |
| H A D | PFTBuilder.cpp | 1266 auto ibgn = iter->first; in analyzeAliases() local
1267 auto ilen = iter->second - ibgn + 1; in analyzeAliases()
1269 lower::pft::Variable::Interval interval(ibgn, ilen); in analyzeAliases()
1272 << "interval [" << ibgn << ".." << ibgn + ilen in analyzeAliases()
1277 LLVM_DEBUG(llvm::dbgs() << "interval [" << ibgn << ".." << ibgn + ilen in analyzeAliases()
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| /dports/devel/wasi-compiler-rt13/llvm-project-13.0.1.src/flang/lib/Lower/ |
| H A D | PFTBuilder.cpp | 1266 auto ibgn = iter->first; in analyzeAliases() local
1267 auto ilen = iter->second - ibgn + 1; in analyzeAliases()
1269 lower::pft::Variable::Interval interval(ibgn, ilen); in analyzeAliases()
1272 << "interval [" << ibgn << ".." << ibgn + ilen in analyzeAliases()
1277 LLVM_DEBUG(llvm::dbgs() << "interval [" << ibgn << ".." << ibgn + ilen in analyzeAliases()
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| /dports/devel/llvm13/llvm-project-13.0.1.src/flang/lib/Lower/ |
| H A D | PFTBuilder.cpp | 1266 auto ibgn = iter->first;
1267 auto ilen = iter->second - ibgn + 1;
1269 lower::pft::Variable::Interval interval(ibgn, ilen);
1272 << "interval [" << ibgn << ".." << ibgn + ilen
1277 LLVM_DEBUG(llvm::dbgs() << "interval [" << ibgn << ".." << ibgn + ilen
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| /dports/science/code_saturne/code_saturne-7.1.0/src/rayt/ |
| H A D | cs_rad_transfer_fsck.c | 597 int ibgn = 0; in _simple_interpg() local
601 for (int i = ibgn; i < nxy; i++) { in _simple_interpg()
614 ibgn = i; in _simple_interpg()
621 ibgn = i; in _simple_interpg()
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| /dports/math/freefem++/FreeFem-sources-4.6/3rdparty/dissection/src/Driver/ |
| H A D | C_Dsub.cpp | 4235 const int ibgn = mtrx->BlockIndex(begin); in update_parents_list() local
4237 for (int m = ibgn; m <= iend; m++) { in update_parents_list()
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| /dports/chinese/rime-array/rime-array-d10f2f8b2aec7c7e736ace01e8a399e5ae5e7c3a/ |
| H A D | array30_phrases.dict.yaml | 62755 金屬礦床 ibgn'
|