| /dports/biology/bcftools/bcftools-1.14/ |
| H A D | vcfindex.c | 286 kstring_t idx_fname = {0,0,0}; in main_vcfindex() local
288 kputs(outfn,&idx_fname); in main_vcfindex()
292 ksprintf(&idx_fname, "%s.%s", fname, tbi ? "tbi" : "csi"); in main_vcfindex()
298 if ( stat(idx_fname.s, &stat_tbi)==0 ) in main_vcfindex()
303 …(stderr,"[E::%s] the index file exists. Please use '-f' to overwrite %s\n", __func__, idx_fname.s); in main_vcfindex()
304 free(idx_fname.s); in main_vcfindex()
317 int ret = bcf_index_build3(fname, idx_fname.s, min_shift, n_threads); in main_vcfindex()
318 free(idx_fname.s); in main_vcfindex()
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| /dports/biology/bio-mocha/bcftools-1.14/ |
| H A D | vcfindex.c | 286 kstring_t idx_fname = {0,0,0}; in main_vcfindex() local
288 kputs(outfn,&idx_fname); in main_vcfindex()
292 ksprintf(&idx_fname, "%s.%s", fname, tbi ? "tbi" : "csi"); in main_vcfindex()
298 if ( stat(idx_fname.s, &stat_tbi)==0 ) in main_vcfindex()
303 …(stderr,"[E::%s] the index file exists. Please use '-f' to overwrite %s\n", __func__, idx_fname.s); in main_vcfindex()
304 free(idx_fname.s); in main_vcfindex()
317 int ret = bcf_index_build3(fname, idx_fname.s, min_shift, n_threads); in main_vcfindex()
318 free(idx_fname.s); in main_vcfindex()
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| /dports/biology/py-pysam/pysam-0.18.0/bcftools/ |
| H A D | vcfindex.c | 286 kstring_t idx_fname = {0,0,0}; in main_vcfindex() local
288 kputs(outfn,&idx_fname); in main_vcfindex()
292 ksprintf(&idx_fname, "%s.%s", fname, tbi ? "tbi" : "csi"); in main_vcfindex()
298 if ( stat(idx_fname.s, &stat_tbi)==0 ) in main_vcfindex()
303 …(stderr,"[E::%s] the index file exists. Please use '-f' to overwrite %s\n", __func__, idx_fname.s); in main_vcfindex()
304 free(idx_fname.s); in main_vcfindex()
317 int ret = bcf_index_build3(fname, idx_fname.s, min_shift, n_threads); in main_vcfindex()
318 free(idx_fname.s); in main_vcfindex()
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| H A D | vcfindex.c.pysam.c | 288 kstring_t idx_fname = {0,0,0}; in main_vcfindex() local
290 kputs(outfn,&idx_fname); in main_vcfindex()
294 ksprintf(&idx_fname, "%s.%s", fname, tbi ? "tbi" : "csi"); in main_vcfindex()
300 if ( stat(idx_fname.s, &stat_tbi)==0 ) in main_vcfindex()
305 …_stderr,"[E::%s] the index file exists. Please use '-f' to overwrite %s\n", __func__, idx_fname.s); in main_vcfindex()
306 free(idx_fname.s); in main_vcfindex()
319 int ret = bcf_index_build3(fname, idx_fname.s, min_shift, n_threads); in main_vcfindex()
320 free(idx_fname.s); in main_vcfindex()
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| /dports/sysutils/py-pytsk/pytsk3-20210419/sleuthkit/tsk/hashdb/ |
| H A D | binsrch_index.cpp | 95 hdb_binsrch_info->idx_fname = in hdb_binsrch_idx_init_hash_type_info()
97 if (hdb_binsrch_info->idx_fname == NULL) { in hdb_binsrch_idx_init_hash_type_info()
113 TSNPRINTF(hdb_binsrch_info->idx_fname, flen, in hdb_binsrch_idx_init_hash_type_info()
123 TSNPRINTF(hdb_binsrch_info->idx_fname, flen, in hdb_binsrch_idx_init_hash_type_info()
159 return hdb_binsrch_info->idx_fname; in hdb_binsrch_get_index_path()
332 hdb_binsrch_info->idx_fname); in hdb_binsrch_open_idx_file()
344 hdb_binsrch_info->idx_fname); in hdb_binsrch_open_idx_file()
383 hdb_binsrch_info->idx_fname); in hdb_binsrch_open_idx_file()
394 hdb_binsrch_info->idx_fname); in hdb_binsrch_open_idx_file()
1586 free(hdb_info->idx_fname); in hdb_binsrch_close()
[all …]
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| H A D | tsk_hashdb.h | 148 …TSK_TCHAR *idx_fname; ///< Name of index file, may be NULL for database without external i… member
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| /dports/sysutils/sleuthkit/sleuthkit-4.7.0/tsk/hashdb/ |
| H A D | binsrch_index.cpp | 95 hdb_binsrch_info->idx_fname = in hdb_binsrch_idx_init_hash_type_info()
97 if (hdb_binsrch_info->idx_fname == NULL) { in hdb_binsrch_idx_init_hash_type_info()
113 TSNPRINTF(hdb_binsrch_info->idx_fname, flen, in hdb_binsrch_idx_init_hash_type_info()
123 TSNPRINTF(hdb_binsrch_info->idx_fname, flen, in hdb_binsrch_idx_init_hash_type_info()
159 return hdb_binsrch_info->idx_fname; in hdb_binsrch_get_index_path()
332 hdb_binsrch_info->idx_fname); in hdb_binsrch_open_idx_file()
344 hdb_binsrch_info->idx_fname); in hdb_binsrch_open_idx_file()
383 hdb_binsrch_info->idx_fname); in hdb_binsrch_open_idx_file()
394 hdb_binsrch_info->idx_fname); in hdb_binsrch_open_idx_file()
1586 free(hdb_info->idx_fname); in hdb_binsrch_close()
[all …]
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| H A D | tsk_hashdb.h | 146 …TSK_TCHAR *idx_fname; ///< Name of index file, may be NULL for database without external i… member
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| /dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/ |
| H A D | tabix.c | 661 char *idx_fname = calloc(strlen(fname) + 6, 1); in main() local
662 if (!idx_fname) error("%s\n", strerror(errno)); in main()
663 strcat(strcpy(idx_fname, fname), suffix); in main()
666 if ( !is_force && stat(idx_fname, &stat_tbi)==0 ) in main()
675 free(idx_fname); in main()
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| /dports/biology/py-pysam/pysam-0.18.0/htslib/ |
| H A D | tabix.c | 661 char *idx_fname = calloc(strlen(fname) + 6, 1); in main() local
662 if (!idx_fname) error("%s\n", strerror(errno)); in main()
663 strcat(strcpy(idx_fname, fname), suffix); in main()
666 if ( !is_force && stat(idx_fname, &stat_tbi)==0 ) in main()
675 free(idx_fname); in main()
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| /dports/biology/htslib/htslib-1.14/ |
| H A D | tabix.c | 661 char *idx_fname = calloc(strlen(fname) + 6, 1); in main() local
662 if (!idx_fname) error("%s\n", strerror(errno)); in main()
663 strcat(strcpy(idx_fname, fname), suffix); in main()
666 if ( !is_force && stat(idx_fname, &stat_tbi)==0 ) in main()
675 free(idx_fname); in main()
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| /dports/biology/vt/vt-0.57721/lib/htslib/ |
| H A D | tabix.c | 505 char *idx_fname = calloc(strlen(fname) + 5, 1); in main() local
506 strcat(strcpy(idx_fname, fname), suffix); in main()
509 if ( !is_force && stat(idx_fname, &stat_tbi)==0 ) in main()
518 free(idx_fname); in main()
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| /dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/ |
| H A D | tabix.c | 505 char *idx_fname = calloc(strlen(fname) + 5, 1); in main() local
506 strcat(strcpy(idx_fname, fname), suffix); in main()
509 if ( !is_force && stat(idx_fname, &stat_tbi)==0 ) in main()
518 free(idx_fname); in main()
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| /dports/biology/stacks/stacks-2.4/htslib/ |
| H A D | tabix.c | 505 char *idx_fname = calloc(strlen(fname) + 5, 1); in main() local
506 strcat(strcpy(idx_fname, fname), suffix); in main()
509 if ( !is_force && stat(idx_fname, &stat_tbi)==0 ) in main()
518 free(idx_fname); in main()
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| /dports/biology/kallisto/kallisto-0.46.1/ext/htslib/ |
| H A D | tabix.c | 505 char *idx_fname = calloc(strlen(fname) + 5, 1); in main() local
506 strcat(strcpy(idx_fname, fname), suffix); in main()
509 if ( !is_force && stat(idx_fname, &stat_tbi)==0 ) in main()
518 free(idx_fname); in main()
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| /dports/graphics/ossim/ossim-OrchidIsland-2.11.1/include/ossim/vpfutil/ |
| H A D | vpftidx.h | 138 char *idx_fname ,
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| /dports/sysutils/bulk_extractor/bulk_extractor-2.0.0-beta2/src/tsk3/hashdb/ |
| H A D | tsk_hashdb.h | 118 TSK_TCHAR *idx_fname; ///< Name of index file member
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| /dports/graphics/ossim/ossim-OrchidIsland-2.11.1/src/vpfutil/ |
| H A D | vpftidx.c | 1134 char *idx_fname , in create_gazetteer_index() argument
1160 idx_fp = fopen(idx_fname, "wb"); in create_gazetteer_index()
1339 set_type read_gazetteer_index (char *idx_fname, char *query_str ) in read_gazetteer_index() argument
1354 idx_fp = fopen(idx_fname, "rb"); in read_gazetteer_index()
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