| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/igblast/ |
| H A D | igblastp_app.cpp | 113 CRef<CIgBlastOptions> ig_opts(ig_args->GetIgBlastOptions()); in Run() local
123 blastdb.Reset(&(*(ig_opts->m_Db[0]))); in Run()
133 CSearchDatabase sdb(ig_opts->m_Db[0]->GetDatabaseName() + " " + in Run()
166 &*ig_opts); in Run()
177 ig_opts->m_IsProtein, -1, false); in Run()
193 opts_hndl, ig_opts, in Run()
199 CIgBlast lcl_blast(query, blastdb, opts_hndl, ig_opts, scope); in Run()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/align_format/ |
| H A D | tabular.hpp | 605 const CConstRef<blast::CIgBlastOptions>& ig_opts);
619 const CConstRef<blast::CIgBlastOptions>& ig_opts);
666 const CConstRef<blast::CIgBlastOptions> &ig_opts,
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objtools/align_format/ |
| H A D | tabular.hpp | 605 const CConstRef<blast::CIgBlastOptions>& ig_opts);
619 const CConstRef<blast::CIgBlastOptions>& ig_opts);
666 const CConstRef<blast::CIgBlastOptions> &ig_opts,
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/align_format/ |
| H A D | tabular.cpp | 1858 const CConstRef<blast::CIgBlastOptions>& ig_opts) { in SetAirrFormatData() argument
1897 ITERATE (list<string>, iter, ig_opts->m_AirrField) { in SetAirrFormatData()
2163 ITERATE(list<string>, iter, ig_opts->m_AirrField) { in PrintAirrRearrangement()
2174 ITERATE(list<string>, iter, ig_opts->m_AirrField) { in PrintAirrRearrangement()
2222 const CConstRef<blast::CIgBlastOptions> &ig_opts, in SetIgAnnotation() argument
2258 bool is_protein = ig_opts->m_IsProtein; in SetIgAnnotation()
2332 AddIgDomain((ig_opts->m_DomainSystem == "kabat")?"FR1":"FR1-IMGT", in SetIgAnnotation()
2335 AddIgDomain((ig_opts->m_DomainSystem == "kabat")?"CDR1":"CDR1-IMGT", in SetIgAnnotation()
2338 AddIgDomain((ig_opts->m_DomainSystem == "kabat")?"FR2":"FR2-IMGT", in SetIgAnnotation()
2341 AddIgDomain((ig_opts->m_DomainSystem == "kabat")?"CDR2":"CDR2-IMGT", in SetIgAnnotation()
[all …]
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/align_format/ |
| H A D | tabular.cpp | 1858 const CConstRef<blast::CIgBlastOptions>& ig_opts) { in SetAirrFormatData() argument
1897 ITERATE (list<string>, iter, ig_opts->m_AirrField) { in SetAirrFormatData()
2163 ITERATE(list<string>, iter, ig_opts->m_AirrField) { in PrintAirrRearrangement()
2174 ITERATE(list<string>, iter, ig_opts->m_AirrField) { in PrintAirrRearrangement()
2222 const CConstRef<blast::CIgBlastOptions> &ig_opts, in SetIgAnnotation() argument
2258 bool is_protein = ig_opts->m_IsProtein; in SetIgAnnotation()
2332 AddIgDomain((ig_opts->m_DomainSystem == "kabat")?"FR1":"FR1-IMGT", in SetIgAnnotation()
2335 AddIgDomain((ig_opts->m_DomainSystem == "kabat")?"CDR1":"CDR1-IMGT", in SetIgAnnotation()
2338 AddIgDomain((ig_opts->m_DomainSystem == "kabat")?"FR2":"FR2-IMGT", in SetIgAnnotation()
2341 AddIgDomain((ig_opts->m_DomainSystem == "kabat")?"CDR2":"CDR2-IMGT", in SetIgAnnotation()
[all …]
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/blast/format/ |
| H A D | blast_format.hpp | 156 const blast::CIgBlastOptions * ig_opts = NULL,
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/algo/blast/format/ |
| H A D | blast_format.hpp | 156 const blast::CIgBlastOptions * ig_opts = NULL,
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/format/ |
| H A D | blast_format.cpp | 86 const blast::CIgBlastOptions *ig_opts /* = NULL */, in CBlastFormat() argument
109 m_IgOptions(ig_opts), in CBlastFormat()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/format/ |
| H A D | blast_format.cpp | 86 const blast::CIgBlastOptions *ig_opts /* = NULL */, in CBlastFormat() argument
109 m_IgOptions(ig_opts), in CBlastFormat()
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