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Searched refs:inOMSSA (Results 1 – 3 of 3) sorted by relevance

/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/ms/omssa/
H A Dpepxml.cpp158 for (iterF = inOMSSA.GetRequest().front()->GetSettings().GetFixed().begin(); in ConvertModifications()
159 iterF != inOMSSA.GetRequest().front()->GetSettings().GetFixed().end(); ++iterF) { in ConvertModifications()
312 CMSSearch& inOMSSA) in ConvertMSHitSet() argument
429 m_scale = static_cast<float>(inOMSSA.GetRequest().front()->GetSettings().GetScale()); in ConvertFromOMSSA()
521 string dbname = inOMSSA.GetRequest().front()->GetSettings().GetDb(); in ConvertFromOMSSA()
525 …if(inOMSSA.GetResponse().front()->IsSetBioseqs() && inOMSSA.GetResponse().front()->GetBioseqs().Ge… in ConvertFromOMSSA()
543 for (iterF = inOMSSA.GetRequest().front()->GetSettings().GetFixed().begin(); in ConvertFromOMSSA()
544 iterF != inOMSSA.GetRequest().front()->GetSettings().GetFixed().end(); ++iterF) { in ConvertFromOMSSA()
553 for (iterV = inOMSSA.GetRequest().front()->GetSettings().GetVariable().begin(); in ConvertFromOMSSA()
562 for (iHits = inOMSSA.GetResponse().front()->GetHitsets().begin(); in ConvertFromOMSSA()
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H A Domssa2pepXML.cpp122 CMSSearch inOMSSA; in Run() local
182 CSearchHelper::ReadCompleteSearch(filename, format, args["bz2"], inOMSSA); in Run()
184 if (!inOMSSA.CanGetRequest()) { in Run()
196 outPepXML.ConvertFromOMSSA(inOMSSA, Modset, basename, newname); in Run()
H A Dpepxml.hpp61 …void ConvertFromOMSSA(CMSSearch& inOMSSA, CRef <CMSModSpecSet> Modset, string basename, string new…
71 CMSSearch& inOMSSA);
75 …TSpectrum_query& sQueries, CRef<CMSModSpecSet> Modset, set<int>& variableMods, CMSSearch& inOMSSA);