Searched refs:inOMSSA (Results 1 – 3 of 3) sorted by relevance
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/ms/omssa/ |
H A D | pepxml.cpp | 158 for (iterF = inOMSSA.GetRequest().front()->GetSettings().GetFixed().begin(); in ConvertModifications() 159 iterF != inOMSSA.GetRequest().front()->GetSettings().GetFixed().end(); ++iterF) { in ConvertModifications() 312 CMSSearch& inOMSSA) in ConvertMSHitSet() argument 429 m_scale = static_cast<float>(inOMSSA.GetRequest().front()->GetSettings().GetScale()); in ConvertFromOMSSA() 521 string dbname = inOMSSA.GetRequest().front()->GetSettings().GetDb(); in ConvertFromOMSSA() 525 …if(inOMSSA.GetResponse().front()->IsSetBioseqs() && inOMSSA.GetResponse().front()->GetBioseqs().Ge… in ConvertFromOMSSA() 543 for (iterF = inOMSSA.GetRequest().front()->GetSettings().GetFixed().begin(); in ConvertFromOMSSA() 544 iterF != inOMSSA.GetRequest().front()->GetSettings().GetFixed().end(); ++iterF) { in ConvertFromOMSSA() 553 for (iterV = inOMSSA.GetRequest().front()->GetSettings().GetVariable().begin(); in ConvertFromOMSSA() 562 for (iHits = inOMSSA.GetResponse().front()->GetHitsets().begin(); in ConvertFromOMSSA() [all …]
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H A D | omssa2pepXML.cpp | 122 CMSSearch inOMSSA; in Run() local 182 CSearchHelper::ReadCompleteSearch(filename, format, args["bz2"], inOMSSA); in Run() 184 if (!inOMSSA.CanGetRequest()) { in Run() 196 outPepXML.ConvertFromOMSSA(inOMSSA, Modset, basename, newname); in Run()
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H A D | pepxml.hpp | 61 …void ConvertFromOMSSA(CMSSearch& inOMSSA, CRef <CMSModSpecSet> Modset, string basename, string new… 71 CMSSearch& inOMSSA); 75 …TSpectrum_query& sQueries, CRef<CMSModSpecSet> Modset, set<int>& variableMods, CMSSearch& inOMSSA);
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