Searched refs:in_path_2 (Results 1 – 6 of 6) sorted by relevance
38 string in_path_2; variable204 string path_2 = in_path_2 + prefix_2; in process_paired_reads_by_sequence()514 string path_2 = in_path_2 + prefix_2; in process_paired_reads()1170 in_path_2 = in_path_1; in parse_command_line()1260 if (in_path_2.length() > 0 && in_path_2.at(in_path_2.length() - 1) != '/') in parse_command_line()1261 in_path_2 += "/"; in parse_command_line()
38 string in_path_2; variable244 string path_2 = in_path_2 + prefix_2; in process_paired_reads()920 in_path_2 = in_path_1; in parse_command_line()1069 if (in_path_2.length() > 0 && in_path_2.at(in_path_2.length() - 1) != '/') in parse_command_line()1070 in_path_2 += "/"; in parse_command_line()
122 if (stat((in_path_2 + file).c_str(), &sb_1) == -1) { in open_files()123 cerr << "Unable to stat input file '" << in_path_2 + file << "'\n"; in open_files()388 if (stat((in_path_2 + file).c_str(), &sb_1) == -1) { in open_files()389 cerr << "Unable to stat input file '" << in_path_2 + file << "'\n"; in open_files()956 in_path_2 = in_file_p2.substr(0, pos_2 + 1); in build_file_list()961 in_path_2 = in_path_1; in build_file_list()
58 extern string in_path_2;
44 string in_path_2; variable260 string path_2 = in_path_2 + prefix_2; in process_paired_reads()1161 in_path_2 = in_path_1; in parse_command_line()1315 if (in_path_2.length() > 0 && in_path_2.at(in_path_2.length() - 1) != '/') in parse_command_line()1316 in_path_2 += "/"; in parse_command_line()
240 string in_path_2, in process_paired_reads() argument250 string path_2 = in_path_2 + in_file_2; in process_paired_reads()561 string in_path_2, in normalize_paired_reads() argument601 path_2 = in_path_2 + in_file_2; in normalize_paired_reads()