Searched refs:index1part_tr (Results 1 – 3 of 3) sorted by relevance
| /dports/biology/gmap/gmap-2020-09-12/src/ |
| H A D | kmer-search.c | 196 static int index1part_tr; variable
1712 if (max_tplus_count < (querylength - index1part_tr)/5 && in search_transcriptome_complete()
2898 *tminus_diagterm_5 = querypos + index1part_tr; in search_transcriptome_ends()
2901 Oligo_one_nt(forward_oligo,index1part_tr),Oligo_one_nt(revcomp_oligo,index1part_tr), in search_transcriptome_ends()
2906 query_lastpos = querylength - index1part_tr; in search_transcriptome_ends()
2915 *tminus_diagterm_3 = querypos + index1part_tr; in search_transcriptome_ends()
2918 Oligo_one_nt(forward_oligo,index1part_tr),Oligo_one_nt(revcomp_oligo,index1part_tr), in search_transcriptome_ends()
4921 tminus_diagterm_5 = querypos + index1part_tr; in Kmer_remap_transcriptome()
4926 query_lastpos = remap_seqlength - index1part_tr; in Kmer_remap_transcriptome()
4936 tminus_diagterm_3 = querypos + index1part_tr; in Kmer_remap_transcriptome()
[all …]
|
| H A D | gsnap.c | 376 static Width_T index1part_tr = 15; variable
3441 Kmer_search_setup(mode,index1part_tr,index1part,index1interval,local1part,transcriptomelength, in worker_setup()
3491 indexdb,indexdb2,indexdb_tr,index1part_tr,index1part,index1interval, in worker_setup()
3937 indexdb_tr = Indexdb_new_transcriptome(&index1part_tr,&index1interval_tr,transcriptomesubdir, in main()
|
| H A D | stage1hr.c | 156 static int index1part_tr; variable
1710 nmismatches_search_5 = querylength5/index1part_tr; in paired_read_segment_search()
1711 nmismatches_search_3 = querylength3/index1part_tr; in paired_read_segment_search()
3051 index1part_tr = index1part_tr_in; in Stage1hr_setup()
|