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Searched refs:inflate_var (Results 1 – 3 of 3) sorted by relevance

/dports/biology/phyml/phyml-3.3.20200621/src/
H A Drates.c1489 phydbl inflate_var; in RATES_Posterior_One_Rate() local
1496 inflate_var = tree->rates->inflate_var; in RATES_Posterior_One_Rate()
1617 rd = Rnorm_Trunc(post_mean,inflate_var*post_sd,r_min,r_max,&err); in RATES_Posterior_One_Rate()
1672 …io += (Log_Dnorm_Trunc(U1,post_mean,inflate_var*post_sd,r_min,r_max,&err) - Log_Dnorm_Trunc(rd,pos… in RATES_Posterior_One_Rate()
1787 phydbl inflate_var; in RATES_Posterior_One_Time() local
1791 inflate_var = tree->rates->inflate_var; in RATES_Posterior_One_Time()
2000 new_l1 = Rnorm_Trunc(cond_mu[0],inflate_var*SQRT(cond_cov[0*3+0]),bl_min,bl_max,&err); in RATES_Posterior_One_Time()
2132 …ratio += (Log_Dnorm_Trunc(l1, cond_mu[0],inflate_var*SQRT(cond_cov[0*3+0]),bl_min,bl_max,&err) … in RATES_Posterior_One_Time()
2133 Log_Dnorm_Trunc(new_l1,cond_mu[0],inflate_var*SQRT(cond_cov[0*3+0]),bl_min,bl_max,&err)); in RATES_Posterior_One_Time()
H A Dutilities.h1577 phydbl inflate_var; member
H A Dinit.c844 rates->inflate_var = 1.0; in RATES_Init_Rate_Struct()