| /dports/science/libssm/ssm-1.4.0/ssm/ |
| H A D | ssm_vxedge.cpp | 279 initSeqNum = 0; // sequence number of the initial residue in InitVertex()
315 initPos = MMDB->GetResidueNo ( 1,chainID,initSeqNum,initICode ); in GetPositions()
328 initSeqNum,initICode, in GetPositions()
376 initSeqNum = Helix->initSeqNum; in SetVertex()
405 initSeqNum = Strand->initSeqNum; in SetVertex()
442 initSeqNum = seqNum1; in SetVertex()
652 id,nres,chainID,initResName,initSeqNum,initICode, in GetFullVertexDesc()
669 seqNum1 = initSeqNum; in GetVertexRange()
708 initSeqNum = v->initSeqNum; in Copy()
756 f.WriteInt ( &initSeqNum ); in write()
[all …]
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| H A D | ssm_graph.cpp | 513 Vx[k0]->classID,chID,Vx[k0]->initSeqNum, in RepairSS()
773 V[i]->initSeqNum,V[i]->initICode, in _leaveVertices()
872 int & initSeqNum, mmdb::InsCode initICode, in GetVertexRange() argument
879 initSeqNum = V[vn]->initSeqNum; in GetVertexRange()
887 initSeqNum = mmdb::ANY_RES; in GetVertexRange()
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| H A D | ssm_graph.h | 154 int & initSeqNum,
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| H A D | ssm_vxedge.h | 153 int initSeqNum; //!< sequence number of the initial residue variable
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| H A D | ssm_malign.cpp | 956 int initSeqNum,endSeqNum; in WriteMatchedSSEs() local
1044 S[j]->SD.G->GetVertexRange ( vno,chID,initSeqNum,initICode, in WriteMatchedSSEs()
1047 initSeqNum,initICode,endSeqNum,endICode ); in WriteMatchedSSEs()
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| H A D | ssm_superpose.cpp | 851 int initSeqNum,endSeqNum,seqNum; in MapSSEs() local
869 G->GetVertexRange ( i,chID,initSeqNum,initICode, in MapSSEs()
882 if ((p1<0) && (initSeqNum==seqNum) && in MapSSEs()
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| /dports/net/liveMedia/live/liveMedia/ |
| H A D | RTPSource.cpp | 189 initSeqNum(initialSeqNum); in RTPReceptionStats()
221 void RTPReceptionStats::initSeqNum(u_int16_t initialSeqNum) { in initSeqNum() function in RTPReceptionStats
238 if (!fHaveSeenInitialSequenceNumber) initSeqNum(seqNum); in noteIncomingPacket()
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| /dports/science/mmdb2/mmdb2-2.0.20/mmdb2/ |
| H A D | mmdb_model.cpp | 809 Loop->AddInteger ( initSeqNum ); in MakeCIF()
914 initSeqNum = PHelix(Helix)->initSeqNum; in Copy()
932 f.WriteInt ( &initSeqNum ); in write()
950 f.ReadInt ( &initSeqNum ); in read()
982 initSeqNum = MinInt4; in InitStrand()
1143 initSeqNum = Strand->initSeqNum; in Copy()
1167 f.WriteInt ( &initSeqNum ); in write()
1191 f.ReadInt ( &initSeqNum ); in read()
2027 initSeqNum = PTurn(Turn)->initSeqNum; in Copy()
2043 f.WriteInt ( &initSeqNum ); in write()
[all …]
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| H A D | mmdb_model.h | 138 int initSeqNum; // sequence number of the initial residue variable
185 int initSeqNum; // sequence number of the initial residue variable
313 int initSeqNum; // sequence number of the initial residue variable
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| /dports/net/liveMedia/live/liveMedia/include/ |
| H A D | RTPSource.hh | 236 void initSeqNum(u_int16_t initialSeqNum);
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| /dports/biology/emboss/EMBOSS-6.6.0/ajax/core/ |
| H A D | ajpdbio.c | 149 AjPStr initSeqNum; member
2278 element->initSeqNum = ajStrNew(); in pdbioElementNew()
2309 ajStrDel(&((*Pelement)->initSeqNum)); in pdbioElementDel()
2902 ajStrRemoveWhite(&elm->initSeqNum); in pdbioFirstPass()
2928 && MAJSTRGETLEN(elm->initSeqNum) in pdbioFirstPass()
2963 ajStrRemoveWhite(&elm->initSeqNum); in pdbioFirstPass()
2989 ajStrMatchS(elm->initSeqNum, FirstStrand->initSeqNum) && in pdbioFirstPass()
3037 ajStrRemoveWhite(&elm->initSeqNum); in pdbioFirstPass()
7034 if (ajStrMatchS(elms->elms[x]->initSeqNum, in pdbioWriteElementData()
7114 elms->elms[x]->initSeqNum, in pdbioWriteElementData()
[all …]
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| /dports/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/pdb2pqr/src/ |
| H A D | pdb.py | 1362 self.initSeqNum = int(string.strip(line[20:24]))
1432 self.initSeqNum = int(string.strip(line[22:26]))
1505 self.initSeqNum = int(string.strip(line[21:25]))
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| /dports/science/py-geometric/geometric-0.9.7.2/geometric/ |
| H A D | PDB.py | 1504 self.initSeqNum = toInt(line[20:24].strip())
1575 self.initSeqNum = toInt(line[22:26].strip())
1649 self.initSeqNum = toInt(line[21:25].strip())
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