Searched refs:inside_penalty (Results 1 – 8 of 8) sorted by relevance
57 (PR_DEFAULT_INSIDE_PENALTY == (PA)->inside_penalty \350 double inside_penalty; /* Multiply this value times the number of NT member643 (PR_DEFAULT_INSIDE_PENALTY == pa->inside_penalty \
278 a->inside_penalty = PR_DEFAULT_INSIDE_PENALTY;
1763 h->position_penalty *= pa->inside_penalty;
72 (PR_DEFAULT_INSIDE_PENALTY == pa->inside_penalty \421 double inside_penalty; /* Multiply this value times the number of NT member1134 void p3_set_gs_inside_penalty(p3_global_settings * p , double inside_penalty);
94 (PR_DEFAULT_INSIDE_PENALTY == (PA)->inside_penalty \677 a->inside_penalty = PR_DEFAULT_INSIDE_PENALTY; in pr_set_default_global_args_1()4317 h->position_penalty *= pa->inside_penalty; in compute_position_penalty()7758 p->inside_penalty = val ; in p3_set_gs_primer_inside_penalty()8077 p3_set_gs_inside_penalty(p3_global_settings * p , double inside_penalty){ in p3_set_gs_inside_penalty() argument8078 p->inside_penalty = inside_penalty; in p3_set_gs_inside_penalty()8638 printf(" inside_penalty %f\n", p->inside_penalty) ; in p3_print_args()
477 COMPARE_FLOAT("PRIMER_INSIDE_PENALTY", pa->inside_penalty); in read_boulder_record()
301 if (PR_DEFAULT_INSIDE_PENALTY != pa->inside_penalty in print_oligo()
467 doubleProperties.insert("PRIMER_INSIDE_PENALTY", &primerArgs.inside_penalty); in initMaps()