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Searched refs:interval_structs (Results 1 – 2 of 2) sorted by relevance

/dports/biology/gmap/gmap-2020-09-12/src/
H A Dknownsplicing.c259 struct Interval_T *interval_structs; in Knownsplicing_retrieve_via_splicesites() local
379 interval_structs = (struct Interval_T *) CALLOC(nsplicesites1,sizeof(struct Interval_T)); in Knownsplicing_retrieve_via_splicesites()
383 Interval_copy_existing(&(interval_structs[i]),&(splicing_iit->intervals[divno][i])); in Knownsplicing_retrieve_via_splicesites()
399 …Interval_store_length(&(interval_structs[i]),distance + SPLICEDIST_EXTRA); /* Previously stored s… in Knownsplicing_retrieve_via_splicesites()
401 Interval_store_length(&(interval_structs[i]),distance + SPLICEDIST_EXTRA); in Knownsplicing_retrieve_via_splicesites()
409 qsort(interval_structs,nsplicesites1,sizeof(struct Interval_T),Interval_cmp_low_struct); in Knownsplicing_retrieve_via_splicesites()
413 interval = &(interval_structs[i]); in Knownsplicing_retrieve_via_splicesites()
566 FREE(interval_structs); in Knownsplicing_retrieve_via_splicesites()
H A Dsplicetrie_build.c398 struct Interval_T *interval_structs; in Splicetrie_retrieve_via_splicesites() local
535 interval_structs = (struct Interval_T *) CALLOC(nsplicesites1,sizeof(struct Interval_T)); in Splicetrie_retrieve_via_splicesites()
539 Interval_copy_existing(&(interval_structs[i]),&(splicing_iit->intervals[divno][i])); in Splicetrie_retrieve_via_splicesites()
555 …Interval_store_length(&(interval_structs[i]),distance + SPLICEDIST_EXTRA); /* Previously stored s… in Splicetrie_retrieve_via_splicesites()
557 Interval_store_length(&(interval_structs[i]),distance + SPLICEDIST_EXTRA); in Splicetrie_retrieve_via_splicesites()
565 qsort(interval_structs,nsplicesites1,sizeof(struct Interval_T),Interval_cmp_low_struct); in Splicetrie_retrieve_via_splicesites()
569 interval = &(interval_structs[i]); in Splicetrie_retrieve_via_splicesites()
750 FREE(interval_structs); in Splicetrie_retrieve_via_splicesites()