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Searched refs:isBadPair (Results 1 – 6 of 6) sorted by relevance

/dports/biology/bbmap/bbmap/current/align2/
H A DBBMapThread5.java1144 if(r.isBadPair(REQUIRE_CORRECT_STRANDS_PAIRS, SAME_STRAND_PAIRS, MAX_PAIR_DIST)){ in processReadPair()
H A DBBMapThreadPacBio.java1149 if(r.isBadPair(REQUIRE_CORRECT_STRANDS_PAIRS, SAME_STRAND_PAIRS, MAX_PAIR_DIST)){ in processReadPair()
H A DBBMapThread.java1212 if(r.isBadPair(REQUIRE_CORRECT_STRANDS_PAIRS, SAME_STRAND_PAIRS, MAX_PAIR_DIST)){ in processReadPair()
H A DBBMapThreadAcc.java1245 if(r.isBadPair(REQUIRE_CORRECT_STRANDS_PAIRS, SAME_STRAND_PAIRS, MAX_PAIR_DIST)){ in processReadPair()
H A DBBMapThreadPacBioSkimmer.java1537 if(r.isBadPair(REQUIRE_CORRECT_STRANDS_PAIRS, SAME_STRAND_PAIRS, MAX_PAIR_DIST)){ in processReadPair()
/dports/biology/bbmap/bbmap/current/stream/
H A DRead.java1507 public boolean isBadPair(boolean requireCorrectStrands, boolean sameStrandPairs, int maxdist){ in isBadPair() method in Read