Searched refs:isBadPair (Results 1 – 6 of 6) sorted by relevance
/dports/biology/bbmap/bbmap/current/align2/ |
H A D | BBMapThread5.java | 1144 if(r.isBadPair(REQUIRE_CORRECT_STRANDS_PAIRS, SAME_STRAND_PAIRS, MAX_PAIR_DIST)){ in processReadPair()
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H A D | BBMapThreadPacBio.java | 1149 if(r.isBadPair(REQUIRE_CORRECT_STRANDS_PAIRS, SAME_STRAND_PAIRS, MAX_PAIR_DIST)){ in processReadPair()
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H A D | BBMapThread.java | 1212 if(r.isBadPair(REQUIRE_CORRECT_STRANDS_PAIRS, SAME_STRAND_PAIRS, MAX_PAIR_DIST)){ in processReadPair()
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H A D | BBMapThreadAcc.java | 1245 if(r.isBadPair(REQUIRE_CORRECT_STRANDS_PAIRS, SAME_STRAND_PAIRS, MAX_PAIR_DIST)){ in processReadPair()
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H A D | BBMapThreadPacBioSkimmer.java | 1537 if(r.isBadPair(REQUIRE_CORRECT_STRANDS_PAIRS, SAME_STRAND_PAIRS, MAX_PAIR_DIST)){ in processReadPair()
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/dports/biology/bbmap/bbmap/current/stream/ |
H A D | Read.java | 1507 public boolean isBadPair(boolean requireCorrectStrands, boolean sameStrandPairs, int maxdist){ in isBadPair() method in Read
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