Searched refs:isFullyDefinedAA (Results 1 – 4 of 4) sorted by relevance
113 final boolean defined=(AminoAcid.isFullyDefinedAA(qBase) && AminoAcid.isFullyDefinedAA(rBase)); in fillUnlimited()161 final boolean defined=(AminoAcid.isFullyDefinedAA(q) && AminoAcid.isFullyDefinedAA(r));203 boolean defined=(AminoAcid.isFullyDefinedAA(q) && AminoAcid.isFullyDefinedAA(r)); in traceback()275 boolean defined=(AminoAcid.isFullyDefinedAA(q) && AminoAcid.isFullyDefinedAA(r)); in tracebackIdentity()345 boolean defined=(AminoAcid.isFullyDefinedAA(q) && AminoAcid.isFullyDefinedAA(r)); in tracebackIdentityAmino()
492 if(basesSinceMutation>=period && AminoAcid.isFullyDefinedAA(b)){ in processReadAmino()526 if(x<errorRate && AminoAcid.isFullyDefinedAA(b)){ in processReadAmino()
561 if(basesSinceMutation>=period && AminoAcid.isFullyDefinedAA(b)){ in processReadAmino()618 if(x<errorRate && AminoAcid.isFullyDefinedAA(b)){ in processReadAmino()
468 public static boolean isFullyDefinedAA(byte acid){ in isFullyDefinedAA() method in AminoAcid