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Searched refs:isPartAmbig (Results 1 – 4 of 4) sorted by relevance

/dports/biology/mrbayes/MrBayes-3.2.7/src/
H A Dlikelihood.c246 if (p->left->left == NULL && m->isPartAmbig[p->left->index] == NO) in CondLikeDown_Gen()
274 if (p->right->left == NULL && m->isPartAmbig[p->right->index] == NO) in CondLikeDown_Gen()
432 if (p->left->left == NULL && m->isPartAmbig[p->left->index] == NO) in CondLikeDown_Gen_SSE()
640 if (p->left->left == NULL && m->isPartAmbig[p->left->index] == NO) in CondLikeDown_Gen_GibbsGamma()
2257 if (m->isPartAmbig[p->anc->index] == YES) in CondLikeRoot_Gen()
2515 if (m->isPartAmbig[p->anc->index] == YES) in CondLikeRoot_Gen_SSE()
2817 if (m->isPartAmbig[p->anc->index] == YES) in CondLikeRoot_Gen_GibbsGamma()
3038 if (m->isPartAmbig[p->anc->index] == YES) in CondLikeRoot_NUC4()
3276 if (m->isPartAmbig[p->anc->index] == YES) in CondLikeRoot_NUC4_GibbsGamma()
4091 if (m->isPartAmbig[p->anc->index] == YES) in CondLikeRoot_NY98()
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H A Dmbbeagle.c105 if (m->isPartAmbig[i] == YES || beagleAllFloatTips) in InitBeagleInstance()
107 if (m->isPartAmbig[i] == YES) in InitBeagleInstance()
130 if (m->isPartAmbig[i] == NO && !(beagleAllFloatTips)) in InitBeagleInstance()
132 if (m->isPartAmbig[i] == NO) in InitBeagleInstance()
1606 if (m->isPartAmbig[i] == YES) in InitBeagleMultiPartitionInstance()
H A Dbayes.h1310 int *isPartAmbig; /* is tip partially ambiguous? */ member
H A Dmcmc.c307 int *isPartAmbig = NULL; /* records whether tips are partially ambiguous */ variable
4747 free (isPartAmbig); in FreeChainMemory()
4748 isPartAmbig = NULL; in FreeChainMemory()
18627 isPartAmbig = (int *) SafeCalloc (numLocalTaxa*numCurrentDivisions, sizeof(int)); in SetUpTermState()
18628 if (isPartAmbig) in SetUpTermState()
18638 isPartAmbig[i] = NO; in SetUpTermState()
18674 m->isPartAmbig = isPartAmbig + numLocalTaxa * d; in SetUpTermState()
18695 m->isPartAmbig[i] = YES; in SetUpTermState()