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Searched refs:key2id_count (Results 1 – 7 of 7) sorted by relevance

/dports/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/
H A Dspot-assembler.c87 if (ctx->key2id_count == 0) { in GetKeyIDOld()
90 ctx->key2id_count = 1; in GetKeyIDOld()
182 size_t e = ctx->key2id_count; in SpotAssemblerGetKeyID()
226 if (ctx->key2id_count < ctx->key2id_max) { in SpotAssemblerGetKeyID()
229 …rc = OpenKBTree(ctx->cache_size, ctx->tmpfs, ctx->pid, &tree, ctx->key2id_count + 1, 1); /* ctx->k… in SpotAssemblerGetKeyID()
247 if (f < ctx->key2id_count) { in SpotAssemblerGetKeyID()
250 ctx->key2id_oid[f] = ctx->key2id_count; in SpotAssemblerGetKeyID()
251 ++ctx->key2id_count; in SpotAssemblerGetKeyID()
400 for (i = 0; i != self->key2id_count; ++i) in SpotAssemblerRelease()
441 for (idCount = 0, j = 0; j < ctx->key2id_count; ++j) { in SpotAssemblerWriteSoloFragments()
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H A Dspot-assembler.h99 size_t key2id_count; member
/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/loader/
H A Dcommon-writer.c135 if (ctx->key2id_count == 0) { in GetKeyIDOld()
138 ctx->key2id_count = 1; in GetKeyIDOld()
295 size_t e = ctx->key2id_count; in GetKeyID()
339 if (ctx->key2id_count < ctx->key2id_max) { in GetKeyID()
360 if (f < ctx->key2id_count) { in GetKeyID()
363 ctx->key2id_oid[f] = ctx->key2id_count; in GetKeyID()
364 ++ctx->key2id_count; in GetKeyID()
497 for (idCount = 0, j = 0; j < ctx->key2id_count; ++j) { in WriteSoloFragments()
609 assert(keyId >> 32 < ctx->key2id_count); in AlignmentUpdateSpotInfo()
1836 assert(keyId >> 32 < ctx->key2id_count); in ArchiveFile()
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/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/loader/
H A Dcommon-writer.c135 if (ctx->key2id_count == 0) { in GetKeyIDOld()
138 ctx->key2id_count = 1; in GetKeyIDOld()
295 size_t e = ctx->key2id_count; in GetKeyID()
339 if (ctx->key2id_count < ctx->key2id_max) { in GetKeyID()
360 if (f < ctx->key2id_count) { in GetKeyID()
363 ctx->key2id_oid[f] = ctx->key2id_count; in GetKeyID()
364 ++ctx->key2id_count; in GetKeyID()
497 for (idCount = 0, j = 0; j < ctx->key2id_count; ++j) { in WriteSoloFragments()
609 assert(keyId >> 32 < ctx->key2id_count); in AlignmentUpdateSpotInfo()
1836 assert(keyId >> 32 < ctx->key2id_count); in ArchiveFile()
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/dports/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader/
H A Dloader-imp.c159 unsigned key2id_count; member
383 if (ctx->key2id_count == 0) { in GetKeyIDOld()
386 ctx->key2id_count = 1; in GetKeyIDOld()
529 unsigned e = ctx->key2id_count; in GetKeyID()
573 if (ctx->key2id_count < ctx->key2id_max) { in GetKeyID()
594 if (f < ctx->key2id_count) { in GetKeyID()
597 ctx->key2id_oid[f] = ctx->key2id_count; in GetKeyID()
598 ++ctx->key2id_count; in GetKeyID()
2605 assert(keyId >> 32 < ctx->keyToID.key2id_count); in ProcessBAM()
2884 assert(keyId >> 32 < ctx->keyToID.key2id_count); in AlignmentUpdateSpotInfo()
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/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/loader/
H A Dcommon-writer.h152 size_t key2id_count; member
/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/interfaces/loader/
H A Dcommon-writer.h152 size_t key2id_count; member