Searched refs:kmer_map_keys (Results 1 – 5 of 5) sorted by relevance
| /dports/biology/stacks/stacks-2.4/src/ |
| H A D | kmers.cc | 223 kmer_map_keys.push_back(kmers[j]); in populate_kmer_hash()
405 for (uint i = 0; i < kmer_map_keys.size(); i++) { in free_kmer_hash()
406 kmer_map[kmer_map_keys[i]].clear(); in free_kmer_hash()
410 for (uint i = 0; i < kmer_map_keys.size(); i++) { in free_kmer_hash()
411 delete [] kmer_map_keys[i]; in free_kmer_hash()
413 kmer_map_keys.clear(); in free_kmer_hash()
421 for (uint i = 0; i < kmer_map_keys.size(); i++) { in free_kmer_hash()
422 kmer_map[kmer_map_keys[i]].clear(); in free_kmer_hash()
426 for (uint i = 0; i < kmer_map_keys.size(); i++) { in free_kmer_hash()
427 delete [] kmer_map_keys[i]; in free_kmer_hash()
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| H A D | kmer_filter.cc | 970 read_kmer_freq(string in_path, SeqKmerHash &kmer_map, vector<char *> &kmer_map_keys) in read_kmer_freq() argument
1035 kmer_map_keys.push_back(hash_key); in read_kmer_freq()
1078 process_file_kmers(string path, SeqKmerHash &kmer_map, vector<char *> &kmer_map_keys) in process_file_kmers() argument
1130 kmer_map_keys.push_back(hash_key); in process_file_kmers()
1488 free_kmer_hash(SeqKmerHash &kmer_map, vector<char *> &kmer_map_keys) in free_kmer_hash() argument
1490 for (uint i = 0; i < kmer_map_keys.size(); i++) { in free_kmer_hash()
1491 delete [] kmer_map_keys[i]; in free_kmer_hash()
1493 kmer_map_keys.clear(); in free_kmer_hash()
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| H A D | ustacks.cc | 507 vector<char *> kmer_map_keys; in search_for_gaps() local
531 populate_kmer_hash(merged, kmer_map, kmer_map_keys, kmer_len); in search_for_gaps()
674 free_kmer_hash(kmer_map, kmer_map_keys); in search_for_gaps()
712 vector<char *> kmer_map_keys; in merge_remainders() local
713 populate_kmer_hash(merged, kmer_map, kmer_map_keys, kmer_len); in merge_remainders()
833 free_kmer_hash(kmer_map, kmer_map_keys); in merge_remainders()
872 vector<char *> kmer_map_keys; in search_for_gapped_remainders() local
873 populate_kmer_hash(merged, kmer_map, kmer_map_keys, kmer_len); in search_for_gapped_remainders()
990 free_kmer_hash(kmer_map, kmer_map_keys); in search_for_gapped_remainders()
2026 vector<char *> kmer_map_keys; in calc_kmer_distance() local
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| H A D | cstacks.cc | 602 vector<char *> kmer_map_keys; in find_kmer_matches_by_sequence() local
629 populate_kmer_hash(catalog, kmer_map, kmer_map_keys, allele_map, kmer_len); in find_kmer_matches_by_sequence()
760 free_kmer_hash(kmer_map, kmer_map_keys); in find_kmer_matches_by_sequence()
773 vector<char *> kmer_map_keys; in search_for_gaps() local
792 populate_kmer_hash(catalog, kmer_map, kmer_map_keys, allele_map, kmer_len); in search_for_gaps()
950 free_kmer_hash(kmer_map, kmer_map_keys); in search_for_gaps()
1536 …map<int, CLocus *> &catalog, CatKmerHashMap &kmer_map, vector<char *> &kmer_map_keys, int kmer_len) in populate_kmer_hash() argument
1573 kmer_map_keys.push_back(hash_key); in populate_kmer_hash()
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| H A D | sstacks.cc | 86 vector<char *> kmer_map_keys; in main() local
99 populate_kmer_hash(catalog, kmer_map, kmer_map_keys, allele_map, gapped_kmer_len); in main()
161 free_kmer_hash(kmer_map, kmer_map_keys); in main()
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