Searched refs:lDim1 (Results 1 – 4 of 4) sorted by relevance
| /dports/biology/seqan1/seqan-1.3.1/apps/razers/ |
| H A D | razers_spliced.h | 560 unsigned lDim1 = m.gBegin - beginPosition(inf); in extendMatch() local
563 Seed<int,SimpleSeed> seed(lDim0, lDim1, rDim0, rDim1); in extendMatch()
571 ::std::cout << " lDim1: " << lDim1 << ::std::endl; in extendMatch()
576 ::std::cout << " gInfInf: "<< infix(inf,lDim1,rDim1+1) << ::std::endl; in extendMatch()
609 unsigned lDim1 = m.gBegin - beginPosition(inf); in extendMatch() local
612 Seed<int,SimpleSeed> seed(lDim0, lDim1, rDim0, rDim1); in extendMatch()
620 ::std::cout << " lDim1: " << lDim1 << ::std::endl; in extendMatch()
625 ::std::cout << " gInfInf: "<< infix(inf,lDim1,rDim1+1) << ::std::endl; in extendMatch()
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/razers/ |
| H A D | razers_spliced.h | 562 unsigned lDim1 = m.gBegin - beginPosition(inf); in extendMatch() local
565 Seed<int,SimpleSeed> seed(lDim0, lDim1, rDim0, rDim1); in extendMatch()
573 ::std::cout << " lDim1: " << lDim1 << ::std::endl; in extendMatch()
578 ::std::cout << " gInfInf: "<< infix(inf,lDim1,rDim1+1) << ::std::endl; in extendMatch()
611 unsigned lDim1 = m.gBegin - beginPosition(inf); in extendMatch() local
614 Seed<int,SimpleSeed> seed(lDim0, lDim1, rDim0, rDim1); in extendMatch()
622 ::std::cout << " lDim1: " << lDim1 << ::std::endl; in extendMatch()
627 ::std::cout << " gInfInf: "<< infix(inf,lDim1,rDim1+1) << ::std::endl; in extendMatch()
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| /dports/biology/seqan1/seqan-1.3.1/apps/splazers/ |
| H A D | razers_spliced.h | 591 unsigned lDim1 = m.gBegin - beginPosition(inf); in extendMatch() local
596 Seed<int,SimpleSeed> seed(lDim0, lDim1, rDim0, rDim1); in extendMatch()
604 ::std::cout << " lDim1: " << lDim1 << ::std::endl; in extendMatch()
609 ::std::cout << " gInfInf: "<< infix(inf,lDim1,rDim1+1) << ::std::endl; in extendMatch()
644 unsigned lDim1 = m.gBegin - beginPosition(inf); in extendMatch() local
647 Seed<int,SimpleSeed> seed(lDim0, lDim1, rDim0, rDim1); in extendMatch()
655 ::std::cout << " lDim1: " << lDim1 << ::std::endl; in extendMatch()
660 ::std::cout << " gInfInf: "<< infix(inf,lDim1,rDim1+1) << ::std::endl; in extendMatch()
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/splazers/ |
| H A D | razers_spliced.h | 747 unsigned lDim1 = m.gBegin - beginPosition(inf); in extendMatch() local
754 Seed<Simple> seed(lDim0, lDim1, rDim0+1, rDim1+1); in extendMatch()
762 ::std::cout << " lDim1: " << lDim1 << ::std::endl; in extendMatch()
767 ::std::cout << " gInfInf: "<< infix(inf,lDim1,rDim1+1) << ::std::endl; in extendMatch()
811 unsigned lDim1 = m.gBegin - beginPosition(inf); in extendMatch() local
815 Seed<Simple> seed(lDim0, lDim1, rDim0+1, rDim1+1); in extendMatch()
823 ::std::cout << " lDim1: " << lDim1 << ::std::endl; in extendMatch()
828 ::std::cout << " gInfInf: "<< infix(inf,lDim1,rDim1+1) << ::std::endl; in extendMatch()
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