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Searched refs:last_cds (Results 1 – 6 of 6) sorted by relevance

/dports/biology/p5-Bio-Graphics/Bio-Graphics-2.40/lib/Bio/Graphics/Glyph/
H A Dprocessed_transcript.pm47 my $last_cds = $cds[-1];
66 last if $end <= $last_cds->end;
67 my $start = $last_cds->end < $exons[$i]->start ? $exons[$i]->start : $last_cds->end+1;
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objmgr/util/
H A Dautodef_feature_clause_base.cpp984 size_t last_cds = m_ClauseList.size(); in FindAltSplices() local
993 if (x_MeetAltSpliceRules(last_cds, k, splice_name)) { in FindAltSplices()
995 m_ClauseList[last_cds]->SetAltSpliced(splice_name); in FindAltSplices()
1002 m_ClauseList[last_cds]->AddSubclause(new_subfeatures[j]); in FindAltSplices()
1011 m_ClauseList[last_cds]->Label(suppress_allele); in FindAltSplices()
1013 last_cds = k; in FindAltSplices()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objmgr/util/
H A Dautodef_feature_clause_base.cpp984 size_t last_cds = m_ClauseList.size(); in FindAltSplices() local
993 if (x_MeetAltSpliceRules(last_cds, k, splice_name)) { in FindAltSplices()
995 m_ClauseList[last_cds]->SetAltSpliced(splice_name); in FindAltSplices()
1002 m_ClauseList[last_cds]->AddSubclause(new_subfeatures[j]); in FindAltSplices()
1011 m_ClauseList[last_cds]->Label(suppress_allele); in FindAltSplices()
1013 last_cds = k; in FindAltSplices()
/dports/biology/p5-transdecoder/TransDecoder-TransDecoder-v5.4.0/PerlLib/
H A DGene_obj.pm3639 $cds->{last_cds} = 1;
3708 if ($prime3_partial && $cds_obj->{last_cds}) {
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/cleanup/test/
H A Dunit_test_extended_cleanup.cpp1597 auto last_cds = cds_ftable.back(); in AddNextCDSToNucProt() local
/dports/biology/ncbi-toolkit/ncbi/api/
H A Dsqnutil4.c10031 ValNodePtr last_cds in RemoveAllButLastCDS() argument
10043 if (last_cds != NULL) in RemoveAllButLastCDS()
10045 last_cds->choice = DEFLINE_REMOVEFEAT; in RemoveAllButLastCDS()
10047 last_cds = vnp; in RemoveAllButLastCDS()
10052 last_cds = RemoveAllButLastCDS (fcp->featlist, last_cds); in RemoveAllButLastCDS()
10055 return last_cds; in RemoveAllButLastCDS()