Searched refs:leftMasks (Results 1 – 6 of 6) sorted by relevance
121 leftMasks=new long[symbolArrayLen]; in KExpand()127 leftMasks[i]=((-1L)<<(bitsPerBase*i)); in KExpand()648 final long temp=(kmer&leftMasks[i])|((kmer<<bitsPerBase)&rightMasks[i])|extraBase; in mutateSDI()661 final long temp0=(kmer&leftMasks[i])|((kmer&rightMasks[i])>>bitsPerBase); in mutateSDI()715 final long temp=(kmer&leftMasks[i])|((kmer<<bitsPerBase)&rightMasks[i])|extraBase; in mutateE()728 final long temp0=(kmer&leftMasks[i])|((kmer&rightMasks[i])>>bitsPerBase); in mutateE()846 final long[] leftMasks; field in KExpand
1796 final long temp=(kmer&leftMasks[i])|((kmer<<2)&rightMasks[i])|extraBase;1807 final long temp0=(kmer&leftMasks[i])|((kmer&rightMasks[i])>>2);3097 private static final long[] leftMasks; local3116 leftMasks=new long[32];3124 leftMasks[i]=((-1L)<<(2*i));
1928 final long temp=(kmer&leftMasks[i])|((kmer<<2)&rightMasks[i])|extraBase; in mutate()1939 final long temp0=(kmer&leftMasks[i])|((kmer&rightMasks[i])>>2); in mutate()3694 private static final long[] leftMasks; field in BBDuk23710 leftMasks=new long[32];3718 leftMasks[i]=((-1L)<<(2*i));
785 leftMasks=new long[symbolArrayLen]; in BBDuk()791 leftMasks[i]=((-1L)<<(bitsPerBase*i)); in BBDuk()2335 final long temp=(kmer&leftMasks[i])|((kmer<<bitsPerBase)&rightMasks[i])|extraBase; in mutate()2346 final long temp0=(kmer&leftMasks[i])|((kmer&rightMasks[i])>>bitsPerBase); in mutate()4876 final long[] leftMasks; local
640 final long temp=(kmer&leftMasks[i])|((kmer<<2)&rightMasks[i])|extraBase; in mutate()651 final long temp0=(kmer&leftMasks[i])|((kmer&rightMasks[i])>>2); in mutate()808 private static final long[] leftMasks; field in TableLoaderLockFree822 leftMasks=new long[32];830 leftMasks[i]=((-1L)<<(2*i));
623 private static final long[] leftMasks; field in TableReader635 leftMasks=new long[32];643 leftMasks[i]=((-1L)<<(2*i));