Home
last modified time | relevance | path

Searched refs:lengthLimitIndex (Results 1 – 5 of 5) sorted by relevance

/dports/biology/bbmap/bbmap/current/align2/
H A DBBIndexPacBioSkimmer.java181 int lengthLimitIndex=(int)((1-fractionToExclude)*(lengthHistogram.length-1)); in analyzeIndex() local
184 MAX_USABLE_LENGTH=Tools.max(2*SMALL_GENOME_LIST, lengthHistogram[lengthLimitIndex]); in analyzeIndex()
H A DBBIndex5.java180 int lengthLimitIndex=(int)((1-fractionToExclude)*(lengthHistogram.length-1)); in analyzeIndex() local
183 MAX_USABLE_LENGTH=Tools.max(2*SMALL_GENOME_LIST, lengthHistogram[lengthLimitIndex]); in analyzeIndex()
H A DBBIndexPacBio.java181 int lengthLimitIndex=(int)((1-fractionToExclude)*(lengthHistogram.length-1)); in analyzeIndex() local
184 MAX_USABLE_LENGTH=Tools.max(2*SMALL_GENOME_LIST, lengthHistogram[lengthLimitIndex]); in analyzeIndex()
H A DBBIndexAcc.java181 int lengthLimitIndex=(int)((1-fractionToExclude)*(lengthHistogram.length-1)); in analyzeIndex() local
184 MAX_USABLE_LENGTH=Tools.max(2*SMALL_GENOME_LIST, lengthHistogram[lengthLimitIndex]); in analyzeIndex()
H A DBBIndex.java180 int lengthLimitIndex=(int)((1-fractionToExclude)*(lengthHistogram.length-1)); in analyzeIndex() local
183 MAX_USABLE_LENGTH=Tools.max(2*SMALL_GENOME_LIST, lengthHistogram[lengthLimitIndex]); in analyzeIndex()