/dports/biology/wise/wise2.4.1/src/dynlibsrc/ |
H A D | basematrix.c | 55 boolean can_make_explicit_matrix(int leni,int lenj,int statesize) in can_make_explicit_matrix() argument 57 if( leni*lenj*statesize/1024 > max_matrix_bytes) in can_make_explicit_matrix() 202 BaseMatrix * BaseMatrix_alloc_matrix(int leni,int lenj) in BaseMatrix_alloc_matrix() argument 229 out->matrix[i] = (int *) ckcalloc (lenj,sizeof(int )); in BaseMatrix_alloc_matrix() 239 for(j=0;j<lenj;j++) in BaseMatrix_alloc_matrix() 245 out->lenj=out->maxlenj=lenj; in BaseMatrix_alloc_matrix() 264 boolean expand_BaseMatrix(BaseMatrix * obj,int leni,int lenj) in expand_BaseMatrix() argument 276 if( leni <= obj->maxleni && lenj <= obj->maxlenj) in expand_BaseMatrix() 285 if( lenj > obj->maxlenj ) in expand_BaseMatrix() 286 actualj = lenj; in expand_BaseMatrix() [all …]
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H A D | basematrix.h | 102 int lenj; /* lenj for above matrix */ member 172 boolean Wise2_can_make_explicit_matrix(int leni,int lenj,int statesize); 237 BaseMatrix * Wise2_BaseMatrix_alloc_matrix(int leni,int lenj); 277 boolean Wise2_expand_BaseMatrix(BaseMatrix * obj,int leni,int lenj);
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/dports/math/e-antic/e-antic-1.0.0-rc.13/libeantic/upstream/antic/nmod_poly/ |
H A D | xgcd_hgcd.c | 130 slong lenh, lenj, lenv, lenw, lenR[4]; in _nmod_poly_xgcd_hgcd() local 133 lenh = lenj = lenB; in _nmod_poly_xgcd_hgcd() 140 v = j + lenj; in _nmod_poly_xgcd_hgcd() 147 sgnR = _nmod_poly_hgcd(R, lenR, h, &lenh, j, &lenj, B, lenB, r, lenr, mod); in _nmod_poly_xgcd_hgcd() 162 while (lenj != 0) in _nmod_poly_xgcd_hgcd() 164 __divrem(q, lenq, r, lenr, h, lenh, j, lenj); in _nmod_poly_xgcd_hgcd() 175 __set(G, lenG, j, lenj); in _nmod_poly_xgcd_hgcd() 179 if (lenj < cutoff) in _nmod_poly_xgcd_hgcd() 182 slong lenu0 = lenr - 1, lenu1 = lenj - 1; in _nmod_poly_xgcd_hgcd() 184 lenG = _nmod_poly_xgcd_euclidean(G, u0, u1, j, lenj, r, lenr, mod); in _nmod_poly_xgcd_hgcd() [all …]
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/dports/math/e-antic/flint2-ae7ec89/nmod_poly/ |
H A D | xgcd_hgcd.c | 130 slong lenh, lenj, lenv, lenw, lenR[4]; in _nmod_poly_xgcd_hgcd() local 133 lenh = lenj = lenB; in _nmod_poly_xgcd_hgcd() 140 v = j + lenj; in _nmod_poly_xgcd_hgcd() 147 sgnR = _nmod_poly_hgcd(R, lenR, h, &lenh, j, &lenj, B, lenB, r, lenr, mod); in _nmod_poly_xgcd_hgcd() 162 while (lenj != 0) in _nmod_poly_xgcd_hgcd() 164 __divrem(q, lenq, r, lenr, h, lenh, j, lenj); in _nmod_poly_xgcd_hgcd() 175 __set(G, lenG, j, lenj); in _nmod_poly_xgcd_hgcd() 179 if (lenj < cutoff) in _nmod_poly_xgcd_hgcd() 182 slong lenu0 = lenr - 1, lenu1 = lenj - 1; in _nmod_poly_xgcd_hgcd() 184 lenG = _nmod_poly_xgcd_euclidean(G, u0, u1, j, lenj, r, lenr, mod); in _nmod_poly_xgcd_hgcd() [all …]
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/dports/math/flint2/flint-2.8.4/nmod_poly/ |
H A D | xgcd_hgcd.c | 130 slong lenh, lenj, lenv, lenw, lenR[4]; in _nmod_poly_xgcd_hgcd() local 133 lenh = lenj = lenB; in _nmod_poly_xgcd_hgcd() 140 v = j + lenj; in _nmod_poly_xgcd_hgcd() 147 sgnR = _nmod_poly_hgcd(R, lenR, h, &lenh, j, &lenj, B, lenB, r, lenr, mod); in _nmod_poly_xgcd_hgcd() 162 while (lenj != 0) in _nmod_poly_xgcd_hgcd() 164 __divrem(q, lenq, r, lenr, h, lenh, j, lenj); in _nmod_poly_xgcd_hgcd() 175 __set(G, lenG, j, lenj); in _nmod_poly_xgcd_hgcd() 180 if (lenj < cutoff) in _nmod_poly_xgcd_hgcd() 183 slong lenu0 = lenr - 1, lenu1 = lenj - 1; in _nmod_poly_xgcd_hgcd() 185 lenG = _nmod_poly_xgcd_euclidean(G, u0, u1, j, lenj, r, lenr, mod); in _nmod_poly_xgcd_hgcd() [all …]
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/dports/math/e-antic/flint2-ae7ec89/fmpz_mod_poly/ |
H A D | xgcd_hgcd.c | 134 slong lenh, lenj, lenv, lenw, lenR[4], len2; in _fmpz_mod_poly_xgcd_hgcd() local 137 lenh = lenj = lenB; in _fmpz_mod_poly_xgcd_hgcd() 145 v = j + lenj; in _fmpz_mod_poly_xgcd_hgcd() 152 sgnR = _fmpz_mod_poly_hgcd(R, lenR, h, &lenh, j, &lenj, B, lenB, r, lenr, mod); in _fmpz_mod_poly_xgcd_hgcd() 167 while (lenj != 0) in _fmpz_mod_poly_xgcd_hgcd() 169 __divrem(q, lenq, r, lenr, h, lenh, j, lenj); in _fmpz_mod_poly_xgcd_hgcd() 181 __set(G, lenG, j, lenj); in _fmpz_mod_poly_xgcd_hgcd() 185 if (lenj < FMPZ_MOD_POLY_GCD_CUTOFF) in _fmpz_mod_poly_xgcd_hgcd() 188 slong lenu0 = lenr - 1, lenu1 = lenj - 1; in _fmpz_mod_poly_xgcd_hgcd() 191 lenG = _fmpz_mod_poly_xgcd_euclidean(G, u0, u1, j, lenj, r, lenr, invB, mod); in _fmpz_mod_poly_xgcd_hgcd() [all …]
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/dports/math/flint2/flint-2.8.4/fmpz_mod_poly/ |
H A D | xgcd_hgcd.c | 134 slong lenh, lenj, lenv, lenw, lenR[4], len2; in _fmpz_mod_poly_xgcd_hgcd() local 137 lenh = lenj = lenB; in _fmpz_mod_poly_xgcd_hgcd() 145 v = j + lenj; in _fmpz_mod_poly_xgcd_hgcd() 152 sgnR = _fmpz_mod_poly_hgcd(R, lenR, h, &lenh, j, &lenj, B, lenB, r, lenr, mod); in _fmpz_mod_poly_xgcd_hgcd() 167 while (lenj != 0) in _fmpz_mod_poly_xgcd_hgcd() 169 __divrem(q, lenq, r, lenr, h, lenh, j, lenj); in _fmpz_mod_poly_xgcd_hgcd() 181 __set(G, lenG, j, lenj); in _fmpz_mod_poly_xgcd_hgcd() 185 if (lenj < FMPZ_MOD_POLY_GCD_CUTOFF) in _fmpz_mod_poly_xgcd_hgcd() 188 slong lenu0 = lenr - 1, lenu1 = lenj - 1; in _fmpz_mod_poly_xgcd_hgcd() 191 lenG = _fmpz_mod_poly_xgcd_euclidean(G, u0, u1, j, lenj, r, lenr, invB, mod); in _fmpz_mod_poly_xgcd_hgcd() [all …]
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/dports/math/e-antic/e-antic-1.0.0-rc.13/libeantic/upstream/antic/fmpz_mod_poly/ |
H A D | xgcd_hgcd.c | 134 slong lenh, lenj, lenv, lenw, lenR[4], len2; in _fmpz_mod_poly_xgcd_hgcd() local 137 lenh = lenj = lenB; in _fmpz_mod_poly_xgcd_hgcd() 145 v = j + lenj; in _fmpz_mod_poly_xgcd_hgcd() 152 sgnR = _fmpz_mod_poly_hgcd(R, lenR, h, &lenh, j, &lenj, B, lenB, r, lenr, mod); in _fmpz_mod_poly_xgcd_hgcd() 167 while (lenj != 0) in _fmpz_mod_poly_xgcd_hgcd() 169 __divrem(q, lenq, r, lenr, h, lenh, j, lenj); in _fmpz_mod_poly_xgcd_hgcd() 181 __set(G, lenG, j, lenj); in _fmpz_mod_poly_xgcd_hgcd() 185 if (lenj < FMPZ_MOD_POLY_GCD_CUTOFF) in _fmpz_mod_poly_xgcd_hgcd() 188 slong lenu0 = lenr - 1, lenu1 = lenj - 1; in _fmpz_mod_poly_xgcd_hgcd() 191 lenG = _fmpz_mod_poly_xgcd_euclidean(G, u0, u1, j, lenj, r, lenr, invB, mod); in _fmpz_mod_poly_xgcd_hgcd() [all …]
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/dports/biology/bbmap/bbmap/pytools/lib/ |
H A D | rqc_fastq.py | 106 lenj = 0 # total length of read 2 161 lenj += aLen 170 if lenj > 0 and readj > 0: 171 lenj = lenj / readj 173 return (leni, lenj, is_pe)
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/dports/biology/wise/wise2.4.1/src/models/ |
H A D | motifmatrix.c | 372 MotifConsMatrix * MotifConsMatrix_alloc_matrix(int leni,int lenj) in MotifConsMatrix_alloc_matrix() argument 399 out->mat[i] = (char *) ckcalloc (lenj,sizeof(char )); in MotifConsMatrix_alloc_matrix() 409 for(j=0;j<lenj;j++) in MotifConsMatrix_alloc_matrix() 415 out->lenj=out->maxlenj=lenj; in MotifConsMatrix_alloc_matrix() 434 boolean expand_MotifConsMatrix(MotifConsMatrix * obj,int leni,int lenj) in expand_MotifConsMatrix() argument 446 if( leni <= obj->maxleni && lenj <= obj->maxlenj) in expand_MotifConsMatrix() 455 if( lenj > obj->maxlenj ) in expand_MotifConsMatrix() 456 actualj = lenj; in expand_MotifConsMatrix() 513 out->lenj=out->maxlenj=0; in MotifConsMatrix_alloc()
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H A D | motifmatrix.h | 69 int lenj; /* lenj for above mat */ member 186 MotifConsMatrix * Wise2_MotifConsMatrix_alloc_matrix(int leni,int lenj); 249 boolean Wise2_expand_MotifConsMatrix(MotifConsMatrix * obj,int leni,int lenj);
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/dports/security/aws-iam-authenticator/aws-iam-authenticator-0.5.2/vendor/gonum.org/v1/gonum/blas/gonum/ |
H A D | sgemm.go | 194 lenj := blockSize 195 if j+lenj > n { 196 lenj = n - j 199 cSub := sliceView32(c, ldc, i, j, leni, lenj) 214 bSub = sliceView32(b, ldb, j, k, lenj, lenk) 216 bSub = sliceView32(b, ldb, k, j, lenk, lenj) 218 sgemmSerial(aTrans, bTrans, leni, lenj, lenk, aSub, lda, bSub, ldb, cSub, ldc, alpha)
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H A D | dgemm.go | 190 lenj := blockSize 191 if j+lenj > n { 192 lenj = n - j 195 cSub := sliceView64(c, ldc, i, j, leni, lenj) 210 bSub = sliceView64(b, ldb, j, k, lenj, lenk) 212 bSub = sliceView64(b, ldb, k, j, lenk, lenj) 214 dgemmSerial(aTrans, bTrans, leni, lenj, lenk, aSub, lda, bSub, ldb, cSub, ldc, alpha)
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/dports/www/carbonapi/carbonapi-0.14.1/vendor/gonum.org/v1/gonum/blas/gonum/ |
H A D | sgemm.go | 194 lenj := blockSize 195 if j+lenj > n { 196 lenj = n - j 199 cSub := sliceView32(c, ldc, i, j, leni, lenj) 214 bSub = sliceView32(b, ldb, j, k, lenj, lenk) 216 bSub = sliceView32(b, ldb, k, j, lenk, lenj) 218 sgemmSerial(aTrans, bTrans, leni, lenj, lenk, aSub, lda, bSub, ldb, cSub, ldc, alpha)
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H A D | dgemm.go | 190 lenj := blockSize 191 if j+lenj > n { 192 lenj = n - j 195 cSub := sliceView64(c, ldc, i, j, leni, lenj) 210 bSub = sliceView64(b, ldb, j, k, lenj, lenk) 212 bSub = sliceView64(b, ldb, k, j, lenk, lenj) 214 dgemmSerial(aTrans, bTrans, leni, lenj, lenk, aSub, lda, bSub, ldb, cSub, ldc, alpha)
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/dports/www/grafana8/grafana-8.3.6/vendor/gonum.org/v1/gonum/blas/gonum/ |
H A D | dgemm.go | 183 lenj := blockSize 184 if j+lenj > n { 185 lenj = n - j 188 cSub := sliceView64(c, ldc, i, j, leni, lenj) 203 bSub = sliceView64(b, ldb, j, k, lenj, lenk) 205 bSub = sliceView64(b, ldb, k, j, lenk, lenj) 207 dgemmSerial(aTrans, bTrans, leni, lenj, lenk, aSub, lda, bSub, ldb, cSub, ldc, alpha)
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H A D | sgemm.go | 187 lenj := blockSize 188 if j+lenj > n { 189 lenj = n - j 192 cSub := sliceView32(c, ldc, i, j, leni, lenj) 207 bSub = sliceView32(b, ldb, j, k, lenj, lenk) 209 bSub = sliceView32(b, ldb, k, j, lenk, lenj) 211 sgemmSerial(aTrans, bTrans, leni, lenj, lenk, aSub, lda, bSub, ldb, cSub, ldc, alpha)
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/dports/sysutils/kubectl/kubernetes-1.22.2/vendor/gonum.org/v1/gonum/blas/gonum/ |
H A D | dgemm.go | 190 lenj := blockSize 191 if j+lenj > n { 192 lenj = n - j 195 cSub := sliceView64(c, ldc, i, j, leni, lenj) 210 bSub = sliceView64(b, ldb, j, k, lenj, lenk) 212 bSub = sliceView64(b, ldb, k, j, lenk, lenj) 214 dgemmSerial(aTrans, bTrans, leni, lenj, lenk, aSub, lda, bSub, ldb, cSub, ldc, alpha)
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H A D | sgemm.go | 194 lenj := blockSize 195 if j+lenj > n { 196 lenj = n - j 199 cSub := sliceView32(c, ldc, i, j, leni, lenj) 214 bSub = sliceView32(b, ldb, j, k, lenj, lenk) 216 bSub = sliceView32(b, ldb, k, j, lenk, lenj) 218 sgemmSerial(aTrans, bTrans, leni, lenj, lenk, aSub, lda, bSub, ldb, cSub, ldc, alpha)
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/dports/sysutils/istio/istio-1.6.7/vendor/github.com/openshift/api/vendor/gonum.org/v1/gonum/blas/gonum/ |
H A D | sgemm.go | 194 lenj := blockSize 195 if j+lenj > n { 196 lenj = n - j 199 cSub := sliceView32(c, ldc, i, j, leni, lenj) 214 bSub = sliceView32(b, ldb, j, k, lenj, lenk) 216 bSub = sliceView32(b, ldb, k, j, lenk, lenj) 218 sgemmSerial(aTrans, bTrans, leni, lenj, lenk, aSub, lda, bSub, ldb, cSub, ldc, alpha)
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H A D | dgemm.go | 190 lenj := blockSize 191 if j+lenj > n { 192 lenj = n - j 195 cSub := sliceView64(c, ldc, i, j, leni, lenj) 210 bSub = sliceView64(b, ldb, j, k, lenj, lenk) 212 bSub = sliceView64(b, ldb, k, j, lenk, lenj) 214 dgemmSerial(aTrans, bTrans, leni, lenj, lenk, aSub, lda, bSub, ldb, cSub, ldc, alpha)
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/dports/math/osi/Osi-0.108.6/CoinUtils/src/ |
H A D | CoinPresolveMatrix.cpp | 213 int lenj = src_hincol[j]; in setMatrix() local 215 CoinMemcpyN(src_colels + offset, lenj, colels_ + offset); in setMatrix() 216 CoinMemcpyN(src_hrow + offset, lenj, hrow_ + offset); in setMatrix() 226 int lenj = hincol_[j]; in setMatrix() local 227 for (int k = 0; k < lenj; k++) { in setMatrix() 245 int lenj = hincol_[j]; in setMatrix() local 248 for (int k = 0; k < lenj; k++) { in setMatrix()
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/dports/math/coinutils/CoinUtils-2.11.4/CoinUtils/src/ |
H A D | CoinPresolveMatrix.cpp | 213 int lenj = src_hincol[j]; in setMatrix() local 215 CoinMemcpyN(src_colels + offset, lenj, colels_ + offset); in setMatrix() 216 CoinMemcpyN(src_hrow + offset, lenj, hrow_ + offset); in setMatrix() 226 int lenj = hincol_[j]; in setMatrix() local 227 for (int k = 0; k < lenj; k++) { in setMatrix() 245 int lenj = hincol_[j]; in setMatrix() local 248 for (int k = 0; k < lenj; k++) { in setMatrix()
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/dports/math/ogdf/OGDF/src/coin/CoinUtils/ |
H A D | CoinPresolveMatrix.cpp | 199 { int lenj = src_hincol[j] ; in setMatrix() local 201 CoinMemcpyN(src_colels+offset,lenj,colels_+offset) ; in setMatrix() 202 CoinMemcpyN(src_hrow+offset,lenj,hrow_+offset) ; } in setMatrix() 211 int lenj = hincol_[j] ; in setMatrix() local 212 for (int k = 0 ; k < lenj ; k++) in setMatrix() 227 { int lenj = hincol_[j] ; in setMatrix() local 230 for (int k = 0 ; k < lenj ; k++) in setMatrix()
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/dports/math/clp/Clp-1.17.3/CoinUtils/src/ |
H A D | CoinPresolveMatrix.cpp | 213 int lenj = src_hincol[j]; in setMatrix() local 215 CoinMemcpyN(src_colels + offset, lenj, colels_ + offset); in setMatrix() 216 CoinMemcpyN(src_hrow + offset, lenj, hrow_ + offset); in setMatrix() 226 int lenj = hincol_[j]; in setMatrix() local 227 for (int k = 0; k < lenj; k++) { in setMatrix() 245 int lenj = hincol_[j]; in setMatrix() local 248 for (int k = 0; k < lenj; k++) { in setMatrix()
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