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Searched refs:lh_ptn (Results 1 – 9 of 9) sorted by relevance

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H A Dphylokernelmixrate.h626 lh_ptn = 0.0; in computeMixrateLikelihoodDervEigenSIMD()
672 prob_const = horizontal_add(lh_final)+lh_ptn[0]+lh_ptn[1]; in computeMixrateLikelihoodDervEigenSIMD()
677 prob_const = horizontal_add(lh_final)+lh_ptn[0]+lh_ptn[1]+lh_ptn[2]; in computeMixrateLikelihoodDervEigenSIMD()
809 lh_ptn = log(abs(lh_ptn)); in computeMixrateLikelihoodBranchEigenSIMD()
858 case 3: prob_const = horizontal_add(lh_final)+lh_ptn[0]+lh_ptn[1]+lh_ptn[2]; break; in computeMixrateLikelihoodBranchEigenSIMD()
903 lh_ptn = log(abs(lh_ptn)); in computeMixrateLikelihoodBranchEigenSIMD()
957 case 3: prob_const = horizontal_add(lh_final)+lh_ptn[0]+lh_ptn[1]+lh_ptn[2]; break; in computeMixrateLikelihoodBranchEigenSIMD()
1033 lh_ptn = log(abs(lh_ptn)); in computeMixrateLikelihoodFromBufferEigenSIMD()
1080 lh_ptn = 0.0; in computeMixrateLikelihoodFromBufferEigenSIMD()
1127 prob_const = horizontal_add(lh_final)+lh_ptn[0]+lh_ptn[1]; in computeMixrateLikelihoodFromBufferEigenSIMD()
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H A Dphylokernelmixture.h656 lh_ptn = 0.0; in computeMixtureLikelihoodDervEigenSIMD()
702 prob_const = horizontal_add(lh_final)+lh_ptn[0]+lh_ptn[1]; in computeMixtureLikelihoodDervEigenSIMD()
707 prob_const = horizontal_add(lh_final)+lh_ptn[0]+lh_ptn[1]+lh_ptn[2]; in computeMixtureLikelihoodDervEigenSIMD()
866 lh_ptn = log(abs(lh_ptn)); in computeMixtureLikelihoodBranchEigenSIMD()
941 case 3: prob_const = horizontal_add(lh_final)+lh_ptn[0]+lh_ptn[1]+lh_ptn[2]; break; in computeMixtureLikelihoodBranchEigenSIMD()
985 lh_ptn = log(abs(lh_ptn)); in computeMixtureLikelihoodBranchEigenSIMD()
1039 case 3: prob_const = horizontal_add(lh_final)+lh_ptn[0]+lh_ptn[1]+lh_ptn[2]; break; in computeMixtureLikelihoodBranchEigenSIMD()
1118 lh_ptn = log(abs(lh_ptn)); in computeMixtureLikelihoodFromBufferEigenSIMD()
1165 lh_ptn = 0.0; in computeMixtureLikelihoodFromBufferEigenSIMD()
1212 prob_const = horizontal_add(lh_final)+lh_ptn[0]+lh_ptn[1]; in computeMixtureLikelihoodFromBufferEigenSIMD()
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H A Dphylokernelnonrev.cpp496 ASSERT(lh_ptn > 0.0); in computeNonrevLikelihoodDerv()
510 prob_const += lh_ptn; in computeNonrevLikelihoodDerv()
559 ASSERT(lh_ptn > 0.0); in computeNonrevLikelihoodDerv()
573 prob_const += lh_ptn; in computeNonrevLikelihoodDerv()
710 lh_ptn += lh_cat[c]; in computeNonrevLikelihoodBranch()
713 ASSERT(lh_ptn > 0.0); in computeNonrevLikelihoodBranch()
715 lh_ptn = log(fabs(lh_ptn)) + dad_branch->scale_num[ptn] * LOG_SCALING_THRESHOLD; in computeNonrevLikelihoodBranch()
723 prob_const += lh_ptn; in computeNonrevLikelihoodBranch()
758 lh_ptn += *lh_cat; in computeNonrevLikelihoodBranch()
764 ASSERT(lh_ptn > 0.0); in computeNonrevLikelihoodBranch()
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H A Dphylokernelsafe.h785 lh_ptn = 0.0; in computeLikelihoodDervEigenSIMD()
831 prob_const = horizontal_add(lh_final)+lh_ptn[0]+lh_ptn[1]; in computeLikelihoodDervEigenSIMD()
836 prob_const = horizontal_add(lh_final)+lh_ptn[0]+lh_ptn[1]+lh_ptn[2]; in computeLikelihoodDervEigenSIMD()
990 lh_ptn = log(abs(lh_ptn)) + vc_scale*LOG_SCALING_THRESHOLD; in computeLikelihoodBranchEigenSIMD()
1015 lh_ptn = 0.0; in computeLikelihoodBranchEigenSIMD()
1056 case 3: prob_const = horizontal_add(lh_final)+lh_ptn[0]+lh_ptn[1]+lh_ptn[2]; break; in computeLikelihoodBranchEigenSIMD()
1122 lh_ptn = log(abs(lh_ptn)) + vc_scale*LOG_SCALING_THRESHOLD; in computeLikelihoodBranchEigenSIMD()
1144 lh_ptn = 0.0; in computeLikelihoodBranchEigenSIMD()
1210 case 3: prob_const = horizontal_add(lh_final)+lh_ptn[0]+lh_ptn[1]+lh_ptn[2]; break; in computeLikelihoodBranchEigenSIMD()
1293 lh_ptn = log(abs(lh_ptn)); in computeLikelihoodFromBufferEigenSIMD()
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H A Dphylokernelnonrev.h793 lh_ptn = (lh_ptn + VectorClass().load_a(&ptn_invar[ptn]));
796 lh_ptn = 1.0 / lh_ptn;
941 lh_ptn = mul_add(partial_lh_dad[i], lh_state, lh_ptn);
951 lh_ptn = (lh_ptn + VectorClass().load_a(&ptn_invar[ptn]));
954 lh_ptn = 1.0 / lh_ptn;
1151 VectorClass lh_ptn(0.0);
1239 lh_ptn = lh_ptn + VectorClass().load_a(&ptn_invar[ptn]);
1244 lh_ptn = log(lh_ptn) + vc_min_scale;
1291 VectorClass lh_ptn(0.0);
1368 lh_ptn = lh_ptn + VectorClass().load_a(&ptn_invar[ptn]);
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H A Dphylokernelsitemodel.cpp537 lh_ptn += prop * lh_cat; in computeSitemodelLikelihoodDervEigen()
543 lh_ptn = 1.0/fabs(lh_ptn); in computeSitemodelLikelihoodDervEigen()
603 double lh_ptn = ptn_invar[ptn]; in computeSitemodelLikelihoodBranchEigen() local
616 lh_ptn += *lh_cat; in computeSitemodelLikelihoodBranchEigen()
622 lh_ptn = log(fabs(lh_ptn)); in computeSitemodelLikelihoodBranchEigen()
633 double lh_ptn = ptn_invar[ptn]; in computeSitemodelLikelihoodBranchEigen() local
646 lh_ptn += *lh_cat; in computeSitemodelLikelihoodBranchEigen()
652 lh_ptn = log(fabs(lh_ptn)); in computeSitemodelLikelihoodBranchEigen()
708 double lh_ptn = ptn_invar[ptn]; in computeSitemodelLikelihoodFromBufferEigen() local
723 lh_ptn = log(fabs(lh_ptn)); in computeSitemodelLikelihoodFromBufferEigen()
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H A Dphylokernelnew.h2356 lh_ptn = abs(lh_ptn) + VectorClass().load_a(&ptn_invar[ptn]); in computeLikelihoodDervSIMD()
2424 lh_ptn = mul_add(cat_prop[c], lh_cat, lh_ptn); in computeLikelihoodDervSIMD()
2437 lh_ptn = abs(lh_ptn) + VectorClass().load_a(&ptn_invar[ptn]); in computeLikelihoodDervSIMD()
2440 lh_ptn = 1.0 / lh_ptn; in computeLikelihoodDervSIMD()
2864 lh_ptn = abs(lh_ptn) + VectorClass().load_a(&ptn_invar[ptn]); in computeLikelihoodBranchSIMD()
2866 lh_ptn = log(lh_ptn) + vc_min_scale; in computeLikelihoodBranchSIMD()
2998 lh_ptn = abs(lh_ptn) + VectorClass().load_a(&ptn_invar[ptn]); in computeLikelihoodBranchSIMD()
3001 lh_ptn = log(lh_ptn) + vc_min_scale; in computeLikelihoodBranchSIMD()
3218 lh_ptn = mul_add(lh_cat, cat_prop[c], lh_ptn); in computeLikelihoodFromBufferSIMD()
3226 lh_ptn = abs(lh_ptn) + VectorClass().load_a(&ptn_invar[ptn]); in computeLikelihoodFromBufferSIMD()
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H A Dphylokernelsitemodel.h467 VectorClass lh_ptn[VCSIZE]; in computeSitemodelLikelihoodDervEigenSIMD() local
474 lh_ptn[j] = 0.0; in computeSitemodelLikelihoodDervEigenSIMD()
494 lh_ptn[j] = mul_add(prop, lh_cat, lh_ptn[j]); in computeSitemodelLikelihoodDervEigenSIMD()
587 VectorClass lh_ptn[VCSIZE]; in computeSitemodelLikelihoodBranchEigenSIMD() local
593 lh_ptn[j] = 0.0; in computeSitemodelLikelihoodBranchEigenSIMD()
604 lh_ptn[j] = mul_add(cat_prop[c], lh_cat, lh_ptn[j]); in computeSitemodelLikelihoodBranchEigenSIMD()
652 lh_ptn[j] = 0.0; in computeSitemodelLikelihoodBranchEigenSIMD()
663 lh_ptn[j] = mul_add(cat_prop[c], lh_cat, lh_ptn[j]); in computeSitemodelLikelihoodBranchEigenSIMD()
757 VectorClass lh_ptn[VCSIZE]; in computeSitemodelLikelihoodFromBufferEigenSIMD() local
762 lh_ptn[j] = 0.0; in computeSitemodelLikelihoodFromBufferEigenSIMD()
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H A Dphylotreemixlen.cpp850 double lh_ptn = ptn_invar[ptn], df_ptn = 0.0, ddf_ptn = 0.0; in computeFuncDerv() local
853 lh_ptn += val0[i] * theta[i]; in computeFuncDerv()
859 lh_ptn = fabs(lh_ptn); in computeFuncDerv()
862 double df_frac = df_ptn / lh_ptn; in computeFuncDerv()
863 double ddf_frac = ddf_ptn / lh_ptn; in computeFuncDerv()
871 prob_const += lh_ptn; in computeFuncDerv()