Home
last modified time | relevance | path

Searched refs:lnProposalRatio (Results 1 – 7 of 7) sorted by relevance

/dports/biology/mrbayes/MrBayes-3.2.7/src/
H A Dproposal.h4 …ram *param, int chain, RandLong *seed, MrBFlt *lnPriorRatio, MrBFlt *lnProposalRatio, MrBFlt *mvp);
5 …ram *param, int chain, RandLong *seed, MrBFlt *lnPriorRatio, MrBFlt *lnProposalRatio, MrBFlt *mvp);
6 …ram *param, int chain, RandLong *seed, MrBFlt *lnPriorRatio, MrBFlt *lnProposalRatio, MrBFlt *mvp);
8 …ram *param, int chain, RandLong *seed, MrBFlt *lnPriorRatio, MrBFlt *lnProposalRatio, MrBFlt *mvp);
9 …ram *param, int chain, RandLong *seed, MrBFlt *lnPriorRatio, MrBFlt *lnProposalRatio, MrBFlt *mvp);
10 …ram *param, int chain, RandLong *seed, MrBFlt *lnPriorRatio, MrBFlt *lnProposalRatio, MrBFlt *mvp);
13 …ram *param, int chain, RandLong *seed, MrBFlt *lnPriorRatio, MrBFlt *lnProposalRatio, MrBFlt *mvp);
19 …ram *param, int chain, RandLong *seed, MrBFlt *lnPriorRatio, MrBFlt *lnProposalRatio, MrBFlt *mvp);
22 …ram *param, int chain, RandLong *seed, MrBFlt *lnPriorRatio, MrBFlt *lnProposalRatio, MrBFlt *mvp);
36 …ram *param, int chain, RandLong *seed, MrBFlt *lnPriorRatio, MrBFlt *lnProposalRatio, MrBFlt *mvp);
[all …]
H A Dbest.h20 …ram *param, int chain, RandLong *seed, MrBFlt *lnPriorRatio, MrBFlt *lnProposalRatio, MrBFlt *mvp);
21 …ram *param, int chain, RandLong *seed, MrBFlt *lnPriorRatio, MrBFlt *lnProposalRatio, MrBFlt *mvp);
22 …ram *param, int chain, RandLong *seed, MrBFlt *lnPriorRatio, MrBFlt *lnProposalRatio, MrBFlt *mvp);
23 …ram *param, int chain, RandLong *seed, MrBFlt *lnPriorRatio, MrBFlt *lnProposalRatio, MrBFlt *mvp);
24 …ram *param, int chain, RandLong *seed, MrBFlt *lnPriorRatio, MrBFlt *lnProposalRatio, MrBFlt *mvp);
H A Dproposal.c99 *lnProposalRatio = 0.0; in Move_Aamodel()
367 *lnProposalRatio = 0.0; in Move_Adgamma()
1616 *lnProposalRatio = 0.0; in Move_Extinction()
1727 *lnProposalRatio = 0.0; in Move_Fossilization()
7512 *lnProposalRatio = 0.0; in Move_MixtureRates_Slider()
8453 *lnProposalRatio = 0.0; in Move_Omega()
8892 *lnProposalRatio = 0.0; in Move_OmegaM3()
8959 *lnProposalRatio = 0.0; in Move_OmegaNeu()
9057 *lnProposalRatio = 0.0; in Move_OmegaPos()
9141 *lnProposalRatio = 0.0; in Move_OmegaPur()
[all …]
H A Dbest.c1160 Move_ExtSPRClock(param, chain, seed, lnPriorRatio, lnProposalRatio, mvp); in Move_GeneTree1()
1198 (*lnProposalRatio) += (backwardLnProposalProb - forwardLnProposalProb); in Move_GeneTree1()
1264 Move_NNIClock(param, chain, seed, lnPriorRatio, lnProposalRatio, mvp); in Move_GeneTree2()
1302 (*lnProposalRatio) += (backwardLnProposalProb - forwardLnProposalProb); in Move_GeneTree2()
1368 Move_ParsSPRClock(param, chain, seed, lnPriorRatio, lnProposalRatio, mvp); in Move_GeneTree3()
1406 (*lnProposalRatio) += (backwardLnProposalProb - forwardLnProposalProb); in Move_GeneTree3()
1551 (*lnProposalRatio) = 0.0; in Move_NodeSliderGeneTree()
1568 … (*lnProposalRatio) += nEvents[p->left->index ] * log (p->left->length / oldLeftLength); in Move_NodeSliderGeneTree()
1572 (*lnProposalRatio) += nEvents[p->index] * log (p->length / oldPLength); in Move_NodeSliderGeneTree()
1664 oldDepth, newDepth, (*lnPriorRatio), (*lnProposalRatio)); in Move_NodeSliderGeneTree()
[all …]
H A Dbayes.h879 …ram *param, int chain, RandLong *seed, MrBFlt *lnPriorRatio, MrBFlt *lnProposalRatio, MrBFlt *mvp);
H A Dmcmc.c16027 …MrBFlt r=0.0, lnLikelihoodRatio, lnPriorRatio, lnProposalRatio, lnLike=0.0, lnPrior=0.0, f=0.… in RunChain() local
16790 lnProposalRatio = 0.0; in RunChain()
16816 …if ((theMove->moveFxn)(theMove->parm, chn, seed, &lnPriorRatio, &lnProposalRatio, theMove->tuningP… in RunChain()
16866 if (lnProposalRatio != lnProposalRatio) in RunChain()
16904 if (lnLikelihoodRatio + lnPriorRatio + lnProposalRatio < -100.0) in RunChain()
16906 else if (lnLikelihoodRatio + lnPriorRatio + lnProposalRatio > 0.0) in RunChain()
16909 r = exp(lnLikelihoodRatio + lnPriorRatio + lnProposalRatio); in RunChain()
H A Dmodel.c18192 MrBFlt lnPriorRatio = 0.0, lnProposalRatio = 0.0; in SetModelParams() local