| /dports/biology/mummer/mummer-4.0.0beta2-2-g277dac5/src/tigr/ |
| H A D | show-diff.cc | 64 { return ( i->loR < j->loR ); } in operator ()()
83 return ( i->loR < j->loR ); in operator ()()
142 lpad.loR = lpad.hiR = lpad.loQ = lpad.hiQ = 0; in PrintDiff()
166 rpad.loR = rpad.hiR = mi->second.len + 1; in PrintDiff()
190 gapR = A->loR - PA->hiR - 1; in PrintDiff()
195 PrintBrk(refid, PA->hiR+1, A->loR-1); in PrintDiff()
227 PrintDup(refid, A->loR, A->hiR); in PrintDiff()
235 PA->hiR+1, A->loR-1); in PrintDiff()
264 rpad.loR = rpad.hiR = LONG_MAX; in PrintDiff()
302 A->loR - PGA->hiR - 1 : in PrintDiff()
[all …]
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| H A D | delta.cc | 68 if ( i->loR < j->loR ) in operator ()()
70 else if ( i->loR > j->loR ) in operator ()()
94 ( ( j->loR < i->loR ) ? labs (j->hiR - i->loR) : labs (i->hiR - j->loR) ) + in DiffAligns()
351 p->loR = i->sR; in build()
356 p->dirR = p->hiR < p->loR ? REVERSE_DIR : FORWARD_DIR; in build()
369 Swap (p->loR, p->hiR); in build()
1042 leni = lis[i].a->hiR - lis[i].a->loR + 1; in flagRLIS()
1126 if ( (*eli)->hiR - (*eli)->loR + 1 < minlen || in flagScore()
1188 len = (*eli)->hiR - (*eli)->loR + 1; in flagUNIQ()
1189 for ( i = (*eli)->loR; i <= (*eli)->hiR; i ++ ) in flagUNIQ()
[all …]
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| H A D | show-coords.cc | 639 long int loR, hiR, loQ, hiQ; in annotateOverlaps() local
649 loR = Sip -> sA; in annotateOverlaps()
655 swap (loR, hiR); in annotateOverlaps()
668 (long int)(MAX_OHANG_P * (float)(hiR - loR > hiQ - loQ ? in annotateOverlaps()
669 hiR - loR + 1 : hiQ - loQ + 1)); in annotateOverlaps()
671 if ( (loR <= max_ohang || in annotateOverlaps()
677 if ( loR <= max_ohang && in annotateOverlaps()
682 else if ( loR <= max_ohang && in annotateOverlaps()
690 else if ( loR <= max_ohang ) in annotateOverlaps()
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| H A D | show-snps.cc | 290 for ( i = (*eli) -> loR; i <= (*eli) -> hiR; i ++ ) in CheckSNPs()
382 ss << (*li) -> loR << ' ' << (*li) -> hiR << ' '; in FindSNPs()
384 ss << (*li) -> hiR << ' ' << (*li) -> loR << ' '; in FindSNPs()
405 eR = RevC ((*li) -> loR, lenR); in FindSNPs()
410 sR = (*li) -> loR; in FindSNPs()
652 ((*si)->pR - (*li)->loR < (*li)->hiR - (*si)->pR ? in FindSNPs()
653 (*si)->pR - (*li)->loR : (*li)->hiR - (*si)->pR); in FindSNPs()
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| /dports/x11-toolkits/wxgtk30/wxWidgets-3.0.5.1/src/common/ |
| H A D | rgncmn.cpp | 78 unsigned char loR, in DoRegionUnion() argument
85 hiR = (unsigned char)wxMin(0xFF, loR + tolerance); in DoRegionUnion()
108 if (( R >= loR && R <= hiR) && in DoRegionUnion()
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| /dports/x11-toolkits/wxgtk28-contrib-common/wxGTK-2.8.12/src/common/ |
| H A D | rgncmn.cpp | 79 unsigned char loR, in DoRegionUnion() argument
86 hiR = (unsigned char)wxMin(0xFF, loR + tolerance); in DoRegionUnion()
109 if (( R >= loR && R <= hiR) && in DoRegionUnion()
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| /dports/x11-toolkits/wxgtk28-common/wxGTK-2.8.12/src/common/ |
| H A D | rgncmn.cpp | 79 unsigned char loR, in DoRegionUnion() argument
86 hiR = (unsigned char)wxMin(0xFF, loR + tolerance); in DoRegionUnion()
109 if (( R >= loR && R <= hiR) && in DoRegionUnion()
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| /dports/x11-toolkits/wxgtk28/wxGTK-2.8.12/src/common/ |
| H A D | rgncmn.cpp | 79 unsigned char loR, in DoRegionUnion() argument
86 hiR = (unsigned char)wxMin(0xFF, loR + tolerance); in DoRegionUnion()
109 if (( R >= loR && R <= hiR) && in DoRegionUnion()
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| /dports/x11-toolkits/wxgtk31/wxWidgets-3.1.5/src/common/ |
| H A D | rgncmn.cpp | 76 unsigned char loR, in DoRegionUnion() argument
83 hiR = (unsigned char)wxMin(0xFF, loR + tolerance); in DoRegionUnion()
106 if (( R >= loR && R <= hiR) && in DoRegionUnion()
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| /dports/x11-toolkits/wxgtk28-contrib/wxGTK-2.8.12/src/common/ |
| H A D | rgncmn.cpp | 79 unsigned char loR, in DoRegionUnion() argument
86 hiR = (unsigned char)wxMin(0xFF, loR + tolerance); in DoRegionUnion()
109 if (( R >= loR && R <= hiR) && in DoRegionUnion()
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| /dports/x11-toolkits/py-wxPython40/wxPython-4.0.7/ext/wxWidgets/src/common/ |
| H A D | rgncmn.cpp | 78 unsigned char loR, in DoRegionUnion() argument
85 hiR = (unsigned char)wxMin(0xFF, loR + tolerance); in DoRegionUnion()
108 if (( R >= loR && R <= hiR) && in DoRegionUnion()
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| /dports/biology/mummer/mummer-4.0.0beta2-2-g277dac5/include/mummer/ |
| H A D | delta.hh | 372 long loQ, hiQ, loR, hiR; //!< alignment bounds member
386 loQ = hiQ = loR = hiR = 0; in DeltaEdgelet_t()
413 { return ( isPositive() ? loR : hiR ); } in loQ2R()
416 { return ( isPositive() ? hiR : loR ); } in hiQ2R()
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| /dports/astro/R-cran-maptools/maptools/R/ |
| H A D | sun.R | 497 loR <- !hiR functionVar
498 zz <- loR & exoatmEl > 5
501 zz <- loR & !exoatmEl > 5 & exoatmEl > -0.575
506 zz <- loR & !exoatmEl > 5 & !exoatmEl > -0.575
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| /dports/biology/mummer/mummer-4.0.0beta2-2-g277dac5/scripts/ |
| H A D | mummerplot.pl | 676 my ($loR, $hiR, $loQ, $hiQ);
699 $loR = $dR == 1 ? $sR : $eR;
713 if (${$val->[4]} - ${$val->[3]} > $hiR - $loR)
734 $hiR - $loR >
738 my $aref = [ $slope, $loR, $hiR, $loQ, $hiQ ];
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| /dports/math/fricas/fricas-1.3.7/src/algebra/ |
| H A D | matrix.spad | 204 -- loR := minr ans; loC := minc ans
207 -- hiR := loR + nrows(mat) - 1; hiC := loC + nrows(mat) - 1
208 -- for i in loR..hiR for k in minr(mat)..maxr(mat) repeat
211 -- loR := hiR + 1; loC := hiC + 1
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| H A D | matcat.spad | 434 loR := minr ans; loC := minc ans
436 hiR := loR + nrows(mat) - 1; hiC := loC + nrows(mat) - 1
437 for i in loR..hiR for k in minr(mat)..maxr(mat) repeat
440 loR := hiR + 1; loC := hiC + 1
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| /dports/math/fricas/fricas-1.3.7/pre-generated/src/algebra/ |
| H A D | MATCAT-.lsp | 631 ((|loC| (|Integer|)) (|loR| (|Integer|)) (#1=#:G636 NIL) (|j| NIL)
645 (LETT |loR| (PROGN |ans| 1)) (LETT |loC| (PROGN |ans| 1))
650 (SEQ (LETT |hiR| (- (+ |loR| (ANROWS |mat|)) 1))
654 (LETT |i| |loR|) (LETT #3# |hiR|) G190
674 (LETT |loR| (+ |hiR| 1))
1032 ((|loC| (|Integer|)) (|loR| (|Integer|)) (#1=#:G760 NIL) (|j| NIL)
1048 (LETT |loR| (SPADCALL |ans| (QREFELT $ 17)))
1056 (- (+ |loR| (SPADCALL |mat| (QREFELT $ 11))) 1))
1061 (LETT |i| |loR|) (LETT #3# |hiR|) G190
1080 (LETT |loR| (+ |hiR| 1)) (EXIT (LETT |loC| (+ |hiC| 1))))
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| /dports/math/R-cran-lpSolve/lpSolve/src/ |
| H A D | lp_presolve.c | 2045 loR = get_rh_lower(lp, i), in presolve_colfixdual() local
2047 if(!presolve_singletonbounds(psdata, i, colnr, &loR, &upR, &val)) { in presolve_colfixdual()
2051 if(loR > loX + psdata->epsvalue) in presolve_colfixdual()
2052 loX = presolve_round(lp, loR, TRUE); in presolve_colfixdual()
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| /dports/math/lp_solve/lp_solve_5.5/ |
| H A D | lp_presolve.c | 2026 loR = get_rh_lower(lp, i), in presolve_colfixdual() local
2028 if(!presolve_singletonbounds(psdata, i, colnr, &loR, &upR, &val)) { in presolve_colfixdual()
2032 if(loR > loX + psdata->epsvalue) in presolve_colfixdual()
2033 loX = presolve_roundrhs(lp, loR, TRUE); in presolve_colfixdual()
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| /dports/mail/py-django-mailbox/django-mailbox-4.8.2/django_mailbox/tests/messages/ |
| H A D | message_with_koi8r_filename_attachments.eml | 12769 nrFWUSNoR2PaQtuoCe3koyV9zsf10JRW9D0fN9CPfLSmn/loA93J5j3DEda63/loR+f5aE8X+OhA
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| /dports/biology/bbmap/bbmap/resources/ |
| H A D | blacklist_refseq_merged.sketch | 33016 d`0loR
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| H A D | blacklist_nt_merged.sketch | 53425 240`2loR
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| /dports/math/gap/gap-4.11.0/grp/ |
| H A D | clasmax.grp | 16978 …t.>c3<Tt.WulLXC>b/yA=6X3>mn8`;cWBW?REi/gna*k4]xv9[W?:-R=l-EQCFsx?kbh]B0@kH:loR+s,\\f,KkK,Dsygw.OyN…
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| /dports/security/hashcat-legacy/hashcat-legacy-2.00/salts/ |
| H A D | brute-vbulletin.salt | 693456 loR
|
| /dports/math/py-heyoka/heyoka.py-0.16.0/doc/notebooks/ |
| H A D | tides_spokes.ipynb | 425963 "aSwo+HQdtNRA8vPzGTJkCFeNGUP/a6/loR/+kOCnPwVg0z//SThoEDz0UBTTuyGTItp4VtprcyCs\\\n",
|