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/dports/science/dynare/dynare-4.6.4/contrib/ms-sbvar/switch_dw/switching/
H A Ddw_metropolis_block.c303 logdensity=metropolis->pDrawGibbs(logdensity,metropolis->structure); in draw_metropolis_in_gibbs()
348 logdensity_old=logdensity; in metropolis_draw_all_blocks()
386 logdensity_old=logdensity; in metropolis_draw_single_block()
403 logdensity_old=logdensity; in metropolis_draw_single_block()
540 PRECISION new_scale, old_scale, rescale, logdensity; in AdaptiveScale_metropolis_block() local
551 logdensity=metropolis->pDensity(metropolis->structure); in AdaptiveScale_metropolis_block()
556 logdensity=draw_metropolis(model,logdensity); in AdaptiveScale_metropolis_block()
592 PRECISION new_scale, old_scale, rescale, logdensity; in AdaptiveScale_metropolis_block_single_block() local
605 logdensity=metropolis->pDensity(metropolis->structure); in AdaptiveScale_metropolis_block_single_block()
610 … if (metropolis->pDrawGibbs) logdensity=metropolis->pDrawGibbs(logdensity,metropolis->structure); in AdaptiveScale_metropolis_block_single_block()
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H A Ddw_metropolis_block.h74 PRECISION draw_metropolis_in_gibbs(PRECISION logdensity, TMetropolis_block *metropolis);
75 PRECISION metropolis_draw_all_blocks(PRECISION logdensity, TMetropolis_block *metropolis);
76 PRECISION metropolis_draw_single_block(PRECISION logdensity, int block, TMetropolis_block *metropol…
H A Ddw_mdd_switch.c811 PRECISION logdensity, *q=(PRECISION*)NULL, *theta=(PRECISION*)NULL; in CreateProposal() local
830 …logdensity=(theta) ? LogDensityElliptical_Radius(DrawElliptical(theta,elliptical),elliptical) : 0.… in CreateProposal()
836 logdensity+=LogIndependentDirichlet_pdf(q,alpha,dirichlet_dims,n_dirichlet); in CreateProposal()
840 ElementM(proposal,i,0)=logdensity; in CreateProposal()
892 PRECISION logdensity, *x; in CreatePosterior() local
910 logdensity=(ntheta > 0) ? LogDensityElliptical_Draw(x+2,elliptical) : 0.0; in CreatePosterior()
911 … if (nq > 0) logdensity+=LogIndependentDirichlet_pdf(x+2+ntheta,alpha,dirichlet_dims,n_dirichlet); in CreatePosterior()
912 ElementM(posterior,i,0)=logdensity; in CreatePosterior()
/dports/graphics/cimg/CImg-v.2.9.7/examples/
H A Duse_skeleton.cpp97 logdensity = image.get_logdensity(distance,grad,flux,dlt1), in main() local
98 nflux = image.get_corrected_flux(logdensity,grad,flux,dlt2); in main()
99 if (display) visu.insert(logdensity).insert(nflux); in main()
/dports/math/jags/JAGS-4.3.0/src/modules/bugs/samplers/
H A DRW1.cc41 double logdensity = -_gv->logFullConditional(_chain); in update() local
60 logdensity += _gv->logFullConditional(_chain); in update()
61 accept(rng, exp(logdensity)); in update()
H A DMNormal.cc73 double logdensity = -_gv->logFullConditional(_chain); in update() local
88 logdensity += _gv->logFullConditional(_chain); in update()
89 accept(rng, exp(logdensity)); in update()
/dports/graphics/gmic-qt/CImg-v.2.9.8/examples/
H A Duse_skeleton.cpp97 logdensity = image.get_logdensity(distance,grad,flux,dlt1), in main() local
98 nflux = image.get_corrected_flux(logdensity,grad,flux,dlt2); in main()
99 if (display) visu.insert(logdensity).insert(nflux); in main()
/dports/graphics/cimg/CImg-v.2.9.7/plugins/
H A Dskeleton.h148 CImg<floatT> logdensity(width(),height(),depth(),1,0);
171 …logdensity(p.pos[0],p.pos[1],p.pos[2]) = logdensity.linear_atXYZ(p.pos[0] - Fx,p.pos[1] - Fy,p.pos…
175 if (tmp>delta) logdensity(p.pos[0],p.pos[1],p.pos[2])/=tmp;
176 else if (delta<1) logdensity(p.pos[0],p.pos[1],p.pos[2]) = 0;
179 return logdensity;
190 CImg<floatT> get_corrected_flux(const CImg<floatT> & logdensity,
202 (logdensity(x,y,z) - in cimg_forXYZ()
203 logdensity.linear_atXYZ(x - Fx,y - Fy,z - Fz)) * expf(logdensity(x,y,z) - 0.5f * delta) + in cimg_forXYZ()
204 …0.5f * ( flux.linear_atXYZ(x - Fx,y - Fy,z - Fz)*expf(logdensity.linear_atXYZ(x - Fx,y - Fy,z - Fz… in cimg_forXYZ()
205 flux(x,y,z)*expf(logdensity(x,y,z))); in cimg_forXYZ()
/dports/graphics/gmic-qt/CImg-v.2.9.8/plugins/
H A Dskeleton.h148 CImg<floatT> logdensity(width(),height(),depth(),1,0);
171 …logdensity(p.pos[0],p.pos[1],p.pos[2]) = logdensity.linear_atXYZ(p.pos[0] - Fx,p.pos[1] - Fy,p.pos…
175 if (tmp>delta) logdensity(p.pos[0],p.pos[1],p.pos[2])/=tmp;
176 else if (delta<1) logdensity(p.pos[0],p.pos[1],p.pos[2]) = 0;
179 return logdensity;
190 CImg<floatT> get_corrected_flux(const CImg<floatT> & logdensity,
202 (logdensity(x,y,z) - in cimg_forXYZ()
203 logdensity.linear_atXYZ(x - Fx,y - Fy,z - Fz)) * expf(logdensity(x,y,z) - 0.5f * delta) + in cimg_forXYZ()
204 …0.5f * ( flux.linear_atXYZ(x - Fx,y - Fy,z - Fz)*expf(logdensity.linear_atXYZ(x - Fx,y - Fy,z - Fz… in cimg_forXYZ()
205 flux(x,y,z)*expf(logdensity(x,y,z))); in cimg_forXYZ()
/dports/math/jags/classic-bugs/vol1/blocker/
H A Dblocker.bug5 ld.rt[i] <- logdensity.bin(rt[i], pt[i], nt[i]);
6 ld.rc[i] <- logdensity.bin(rc[i], pc[i], nc[i]);
/dports/math/R-cran-VGAM/VGAM/R/
H A Dfamily.survival.R201 logdensity <- rep_len(log(0), L) functionVar
208 logdensity[xok] <-
212 logdensity[scale <= 0] <- NaN
213 logdensity[shape <= 0] <- NaN
214 if (log.arg) logdensity else exp(logdensity)
H A Dfamily.others.R42 logdensity[rate <= 0] <- NaN
43 if (log.arg) logdensity else exp(logdensity)
361 logdensity
363 exp(logdensity)
698 logdensity
700 exp(logdensity)
988 logdensity
990 exp(logdensity)
1325 logdensity <- log.s1 functionVar
1328 logdensity <- logdensity -log(scale) - log(sqrt(2 * pi))
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H A Dfamily.extremes.R74 logdensity <- rep_len(log(0), use.n) functionVar
93 logdensity[scale <= 0] <- NaN
96 if (log.arg) logdensity else exp(logdensity)
1163 if (log.arg) logdensity else exp(logdensity)
1518 logdensity <- rep_len(log(0), L) functionVar
1541 logdensity[scale <= 0] <- NaN
1542 if (log.arg) logdensity else exp(logdensity)
2636 logdensity <- rep_len(log(0), L) functionVar
2641 logdensity[shape <= 0] <- NaN
2642 logdensity[scale <= 0] <- NaN
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H A Dfamily.circular.R340 logdensity <- rep_len(log(0), L) functionVar
342 logdensity[xok] <- -log(2*pi) + log1p(2 * rho[xok] *
344 logdensity[mu <= 0] <- NaN
345 logdensity[mu >= 2*pi] <- NaN
346 logdensity[rho <= -0.5] <- NaN
347 logdensity[rho >= 0.5] <- NaN
348 if (log.arg) logdensity else exp(logdensity)
H A Dfamily.qreg.R2300 if (log.arg) logdensity else exp(logdensity)
2471 if (log.arg) logdensity else exp(logdensity)
2543 logdensity <- x * NaN functionVar
2579 if (log.arg) logdensity else exp(logdensity)
2648 logdensity <- x * NaN functionVar
2683 if (log.arg) logdensity else exp(logdensity)
3714 if (log.arg) logdensity else exp(logdensity)
4340 if (log.arg) logdensity else exp(logdensity)
4752 logdensity[xok.neg] =
4754 logdensity[xok.pos] =
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H A Dfamily.aunivariate.R269 logdensity[shape1 <= 0] <- NaN
270 logdensity[shape2 <= 0] <- NaN
271 if (log.arg) logdensity else exp(logdensity)
578 logdensity[vee < 0] <- NaN
582 if (log.arg) logdensity else exp(logdensity)
2077 logdensity[tau < 0] <- NaN
2078 logdensity[tau > 1] <- NaN
2079 if (log.arg) logdensity else exp(logdensity)
2214 if (log.arg) logdensity else exp(logdensity)
3959 logdensity[xok] <-
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H A Dfamily.bivariate.R852 logdensity <- log1p(apar) - functionVar
857 logdensity[out.square] <- log(0.0)
862 logdensity[index0] <- log(1.0)
867 logdensity[index1] <- NaN
874 if (log.arg) logdensity else exp(logdensity)
1163 logdensity <-
1172 if (log.arg) logdensity else exp(logdensity)
1527 if (log.arg) logdensity else exp(logdensity)
2115 if (log.arg) logdensity else exp(logdensity)
4627 logdensity <-
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H A Dfamily.univariate.R7628 if (log.arg) logdensity else exp(logdensity)
8064 logdensity[rate <= 0] <- NaN
8065 logdensity[x == Inf] <- log(0)
8066 if (log.arg) logdensity else exp(logdensity)
8347 if (log.arg) logdensity else exp(logdensity)
8581 if (log.arg) logdensity else exp(logdensity)
8921 if (log.arg) logdensity else exp(logdensity)
9614 if (log.arg) logdensity else exp(logdensity)
9836 logdensity[shape <= 0] <- NaN
9838 logdensity[0 > lower] <- NaN
[all …]
H A Dfamily.glmgam.R768 logdensity <- rep_len(log(0), L) functionVar
771 logdensity[xok] <- 0.5 * log(lambda[xok] / (2 * pi * x[xok]^3)) -
773 logdensity[mu <= 0] <- NaN
774 logdensity[lambda <= 0] <- NaN
775 if (log.arg) logdensity else exp(logdensity)
H A Dfamily.categorical.R174 logdensity <- lgamma(size + 1) + rowSums(x * log(prob) - lgamma(x + 1)) functionVar
175 if (log.arg) logdensity else exp(logdensity)
/dports/math/openturns/openturns-1.18/python/test/
H A Dt_InverseWishart_std.py121 logdensity = inverse_wishart.computeLogPDF(X)
126 logdensity = logdensity - inverse_gamma.computeLogPDF(diagX[d, 0])
129 assert_almost_equal(logdensity, logratio)
/dports/math/R-cran-MCMCpack/MCMCpack/man/
H A DMCMCmetrop1R.Rd37 ...)} is greater than \code{-Inf} if \code{fun()} is a logdensity or greater
200 ## really be done with the logdensity for better
202 ## MCMCmetrop1R works with a density rather than logdensity)
/dports/math/jags/JAGS-4.3.0/
H A DNEWS119 "logdensity.foo". The first argument of the log density function is
/dports/math/jags/JAGS-4.3.0/doc/manual/
H A Djags_user_manual.tex1599 ldx <- logdensity.norm(x, mu, tau)
1603 ``\texttt{logdensity.foo}''. The first argument of the log-density