Searched refs:logl_H1 (Results 1 – 4 of 4) sorted by relevance
/dports/biology/gemma/GEMMA-0.98.3/src/ |
H A D | lmm.cpp | 151 outfile << st.logl_H1 << "\t"; in WriteFiles() 1372 double logl_H1 = 0.0, logl_H0 = 0.0, l_H0; in AnalyzeGene() local 1526 double logl_H1 = 0.0; in Analyze() local 1548 p_wald, p_lrt, p_score, logl_H1}; in Analyze() 1715 double logl_H1 = 0.0; in AnalyzePlink() local 1857 logl_H1); in AnalyzePlink() 1870 p_wald, p_lrt, p_score, logl_H1}; in AnalyzePlink() 1893 double logl_H0, logl_H1, log_lr, lambda0, lambda1; in MatrixCalcLR() local 1916 log_lr = logl_H1 - logl_H0; in MatrixCalcLR() 2246 double logl_H1 = 0.0, logl_H0 = 0.0; in AnalyzeBimbamGXE() local [all …]
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H A D | mvlmm.cpp | 2987 double logl_H0 = 0.0, logl_H1 = 0.0, p_wald = 0, p_lrt = 0, p_score = 0; in AnalyzeBimbam() local 3311 logl_H1 = in AnalyzeBimbam() 3334 logl_H1 = in AnalyzeBimbam() 3788 logl_H1 = in AnalyzePlink() 3810 logl_H1 = in AnalyzePlink() 4300 p_lrt = gsl_cdf_chisq_Q(2.0 * (logl_H1 - logl_H0), (double)d_size); in AnalyzeBimbamGXE() 4303 logl_H1 = in AnalyzeBimbamGXE() 4326 logl_H1 = in AnalyzeBimbamGXE() 4777 p_lrt = gsl_cdf_chisq_Q(2.0 * (logl_H1 - logl_H0), (double)d_size); in AnalyzePlinkGXE() 4780 logl_H1 = in AnalyzePlinkGXE() [all …]
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H A D | param.h | 63 double logl_H1; // log likelihood under the alternative variable
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/dports/biology/gemma/GEMMA-0.98.3/ |
H A D | RELEASE-NOTES.md | 189 * #81 printing out beta and se(beta) under -lmm 2 as well as logl_H1
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