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Searched refs:logl_H1 (Results 1 – 4 of 4) sorted by relevance

/dports/biology/gemma/GEMMA-0.98.3/src/
H A Dlmm.cpp151 outfile << st.logl_H1 << "\t"; in WriteFiles()
1372 double logl_H1 = 0.0, logl_H0 = 0.0, l_H0; in AnalyzeGene() local
1526 double logl_H1 = 0.0; in Analyze() local
1548 p_wald, p_lrt, p_score, logl_H1}; in Analyze()
1715 double logl_H1 = 0.0; in AnalyzePlink() local
1857 logl_H1); in AnalyzePlink()
1870 p_wald, p_lrt, p_score, logl_H1}; in AnalyzePlink()
1893 double logl_H0, logl_H1, log_lr, lambda0, lambda1; in MatrixCalcLR() local
1916 log_lr = logl_H1 - logl_H0; in MatrixCalcLR()
2246 double logl_H1 = 0.0, logl_H0 = 0.0; in AnalyzeBimbamGXE() local
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H A Dmvlmm.cpp2987 double logl_H0 = 0.0, logl_H1 = 0.0, p_wald = 0, p_lrt = 0, p_score = 0; in AnalyzeBimbam() local
3311 logl_H1 = in AnalyzeBimbam()
3334 logl_H1 = in AnalyzeBimbam()
3788 logl_H1 = in AnalyzePlink()
3810 logl_H1 = in AnalyzePlink()
4300 p_lrt = gsl_cdf_chisq_Q(2.0 * (logl_H1 - logl_H0), (double)d_size); in AnalyzeBimbamGXE()
4303 logl_H1 = in AnalyzeBimbamGXE()
4326 logl_H1 = in AnalyzeBimbamGXE()
4777 p_lrt = gsl_cdf_chisq_Q(2.0 * (logl_H1 - logl_H0), (double)d_size); in AnalyzePlinkGXE()
4780 logl_H1 = in AnalyzePlinkGXE()
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H A Dparam.h63 double logl_H1; // log likelihood under the alternative variable
/dports/biology/gemma/GEMMA-0.98.3/
H A DRELEASE-NOTES.md189 * #81 printing out beta and se(beta) under -lmm 2 as well as logl_H1