Home
last modified time | relevance | path

Searched refs:m_Annot (Results 1 – 25 of 30) sorted by relevance

12

/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/pubseq_gateway/cassandra/nannot_task/
H A Dinsert.cpp66 , m_Annot(annot) in CCassNAnnotTaskInsert()
131 qry->BindStr(0, m_Annot->GetAccession()); in Wait1()
132 qry->BindInt16(1, m_Annot->GetVersion()); in Wait1()
135 qry->BindInt32(4, m_Annot->GetSatKey()); in Wait1()
137 qry->BindInt32(6, m_Annot->GetStart()); in Wait1()
138 qry->BindInt32(7, m_Annot->GetStop()); in Wait1()
152 m_Annot->GetAccession(), in Wait1()
153 m_Annot->GetAnnotName(), in Wait1()
154 m_Annot->GetVersion(), in Wait1()
155 m_Annot->GetSeqIdType(), in Wait1()
[all …]
H A Ddelete.cpp62 , m_Annot(annot) in CCassNAnnotTaskDelete()
84 m_Annot->GetAccession(), in Wait1()
85 m_Annot->GetAnnotName(), in Wait1()
86 m_Annot->GetVersion(), in Wait1()
87 m_Annot->GetSeqIdType(), in Wait1()
88 m_Annot->GetModified(), in Wait1()
108 query->BindStr(0, m_Annot->GetAccession()); in Wait1()
109 query->BindInt16(1, m_Annot->GetVersion()); in Wait1()
111 query->BindStr(3, m_Annot->GetAnnotName()); in Wait1()
112 query->BindInt32(4, m_Annot->GetSatKey()); in Wait1()
[all …]
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objmgr/
H A Dbioseq_base_info.cpp103 NON_CONST_ITERATE ( TAnnot, it, m_Annot ) { in x_DSAttachContents()
112 NON_CONST_ITERATE ( TAnnot, it, m_Annot ) { in x_DSDetachContents()
157 m_Annot.push_back(info); in x_SetAnnot()
169 ITERATE ( TAnnot, it, annot.m_Annot ) { in x_SetAnnot()
429 ITERATE ( TAnnot, it, m_Annot ) { in ResetAnnot()
432 m_Annot.clear(); in ResetAnnot()
456 m_Annot.push_back(info); in AddAnnot()
472 TAnnot::iterator info_it = find(m_Annot.begin(), m_Annot.end(), info); in RemoveAnnot()
476 _ASSERT(info_it != m_Annot.end()); in RemoveAnnot()
481 m_Annot.erase(info_it); in RemoveAnnot()
[all …]
H A Dseq_graph_handle.cpp48 : m_Annot(annot), in BEGIN_SCOPE()
59 m_Annot.Reset(); in Reset()
65 _ASSERT(m_Annot); in x_GetSeq_graph()
66 const CAnnotObject_Info& info = m_Annot.x_GetInfo().GetInfo(m_AnnotIndex); in x_GetSeq_graph()
83 return m_Annot.x_GetInfo().GetInfo(m_AnnotIndex).IsRemoved(); in IsRemoved()
H A Dseq_align_handle.cpp48 : m_Annot(annot), in BEGIN_SCOPE()
59 m_Annot.Reset(); in Reset()
65 _ASSERT(m_Annot); in x_GetSeq_align()
66 const CAnnotObject_Info& info = m_Annot.x_GetInfo().GetInfo(m_AnnotIndex); in x_GetSeq_align()
83 return m_Annot.x_GetInfo().GetInfo(m_AnnotIndex).IsRemoved(); in IsRemoved()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objmgr/
H A Dbioseq_base_info.cpp103 NON_CONST_ITERATE ( TAnnot, it, m_Annot ) { in x_DSAttachContents()
112 NON_CONST_ITERATE ( TAnnot, it, m_Annot ) { in x_DSDetachContents()
157 m_Annot.push_back(info); in x_SetAnnot()
169 ITERATE ( TAnnot, it, annot.m_Annot ) { in x_SetAnnot()
429 ITERATE ( TAnnot, it, m_Annot ) { in ResetAnnot()
432 m_Annot.clear(); in ResetAnnot()
456 m_Annot.push_back(info); in AddAnnot()
472 TAnnot::iterator info_it = find(m_Annot.begin(), m_Annot.end(), info); in RemoveAnnot()
476 _ASSERT(info_it != m_Annot.end()); in RemoveAnnot()
481 m_Annot.erase(info_it); in RemoveAnnot()
[all …]
H A Dseq_align_handle.cpp48 : m_Annot(annot), in BEGIN_SCOPE()
59 m_Annot.Reset(); in Reset()
65 _ASSERT(m_Annot); in x_GetSeq_align()
66 const CAnnotObject_Info& info = m_Annot.x_GetInfo().GetInfo(m_AnnotIndex); in x_GetSeq_align()
83 return m_Annot.x_GetInfo().GetInfo(m_AnnotIndex).IsRemoved(); in IsRemoved()
H A Dseq_graph_handle.cpp48 : m_Annot(annot), in BEGIN_SCOPE()
59 m_Annot.Reset(); in Reset()
65 _ASSERT(m_Annot); in x_GetSeq_graph()
66 const CAnnotObject_Info& info = m_Annot.x_GetInfo().GetInfo(m_AnnotIndex); in x_GetSeq_graph()
83 return m_Annot.x_GetInfo().GetInfo(m_AnnotIndex).IsRemoved(); in IsRemoved()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/blastfmt/
H A Dcgi_hit_matrix.cpp91 CRef <CSeq_annot> m_Annot; member in CBlastHitMatrixCGIApplication
157 m_Annot.Reset(new CSeq_annot); in x_GetSeqAnnot()
160 *is >> *m_Annot; in x_GetSeqAnnot()
163 m_Annot.Reset(); in x_GetSeqAnnot()
171 CRef <CSeq_annot> m_Annot(new CSeq_annot); in createAnnot() local
184 *in >> *m_Annot; in createAnnot()
189 cerr << MSerial_AsnText << *m_Annot; in createAnnot()
190 return m_Annot; in createAnnot()
198 …m_BlastHitMatrix = new CBlastHitMatrix((*m_Annot).GetData().GetAlign(),m_Height, m_Width,CImageIO:… in x_InitAppData()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objmgr/impl/
H A Dbioseq_base_info.hpp171 TAnnot m_Annot; member in CBioseq_Base_Info
214 return !m_Annot.empty() || x_NeedUpdate(fNeedUpdate_annot); in HasAnnots()
222 return m_Annot; in GetAnnot()
228 return m_Annot; in GetLoadedAnnot()
H A Dseq_entry_edit_commands.hpp279 : m_Handle(handle), m_Annot(TTrait::Store(annot)), m_Scope(scope) in CAttachAnnot_EditCommand()
287 TTrait::Restore(m_Annot)); in Do()
312 TStorage m_Annot; member in CAttachAnnot_EditCommand
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objmgr/impl/
H A Dbioseq_base_info.hpp171 TAnnot m_Annot; member in CBioseq_Base_Info
214 return !m_Annot.empty() || x_NeedUpdate(fNeedUpdate_annot); in HasAnnots()
222 return m_Annot; in GetAnnot()
228 return m_Annot; in GetLoadedAnnot()
H A Dseq_entry_edit_commands.hpp279 : m_Handle(handle), m_Annot(TTrait::Store(annot)), m_Scope(scope) in CAttachAnnot_EditCommand()
287 TTrait::Restore(m_Annot)); in Do()
312 TStorage m_Annot; member in CAttachAnnot_EditCommand
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objmgr/
H A Dseq_align_handle.hpp78 DECLARE_OPERATOR_BOOL(m_Annot && m_AnnotIndex != eNull && !IsRemoved());
122 CSeq_annot_Handle m_Annot; member in CSeq_align_Handle
150 return m_Annot; in GetAnnot()
H A Dseq_graph_handle.hpp76 DECLARE_OPERATOR_BOOL(m_Annot && m_AnnotIndex != eNull && !IsRemoved());
129 CSeq_annot_Handle m_Annot; member in CSeq_graph_Handle
156 return m_Annot; in GetAnnot()
H A Dseq_feat_handle.hpp823 CSeq_annot_EditHandle m_Annot; member in CSeq_annot_ftable_I
839 return m_Annot; in GetAnnot()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objmgr/
H A Dseq_align_handle.hpp78 DECLARE_OPERATOR_BOOL(m_Annot && m_AnnotIndex != eNull && !IsRemoved());
122 CSeq_annot_Handle m_Annot; member in CSeq_align_Handle
150 return m_Annot; in GetAnnot()
H A Dseq_graph_handle.hpp76 DECLARE_OPERATOR_BOOL(m_Annot && m_AnnotIndex != eNull && !IsRemoved());
129 CSeq_annot_Handle m_Annot; member in CSeq_graph_Handle
156 return m_Annot; in GetAnnot()
H A Dseq_feat_handle.hpp823 CSeq_annot_EditHandle m_Annot; member in CSeq_annot_ftable_I
839 return m_Annot; in GetAnnot()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/wig2table/
H A Dwig2table.cpp414 CRef<CSeq_annot> m_Annot; member in CWig2tableApplication
1074 if ( !m_Annot ) { in DumpAnnot()
1080 *m_Output << *m_Annot; in DumpAnnot()
1081 m_Annot = null; in DumpAnnot()
1091 if ( !m_Annot ) { in DumpChromValues()
1092 m_Annot = MakeAnnot(); in DumpChromValues()
1095 m_Annot->SetData().SetGraph().push_back(MakeGraph()); in DumpChromValues()
1098 m_Annot->SetData().SetSeq_table(*MakeTable()); in DumpChromValues()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/pubseq_gateway/impl/cassandra/nannot_task/
H A Ddelete.hpp78 CNAnnotRecord * m_Annot; member in CCassNAnnotTaskDelete
H A Dinsert.hpp84 CNAnnotRecord * m_Annot; member in CCassNAnnotTaskInsert
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/objmgr/split_demo/
H A Dsplit_loader.hpp119 CRef<CSeq_annot> m_Annot; member
H A Dsplit_loader.cpp124 chunk->x_LoadAnnot(annot->m_Place, *annot->m_Annot); in GetChunk()
325 data.m_Annot = &annot; in x_SplitAnnot()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/readers/
H A Dwiggle_reader.cpp803 if ( !m_Annot ) { in xDumpChromValues()
804 m_Annot = xCreateSeqAnnot(); in xDumpChromValues()
807 m_Annot->SetData().SetGraph().push_back(xMakeGraph()); in xDumpChromValues()
810 m_Annot->SetData().SetSeq_table(*xMakeTable()); in xDumpChromValues()

12