/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/pubseq_gateway/cassandra/nannot_task/ |
H A D | insert.cpp | 66 , m_Annot(annot) in CCassNAnnotTaskInsert() 131 qry->BindStr(0, m_Annot->GetAccession()); in Wait1() 132 qry->BindInt16(1, m_Annot->GetVersion()); in Wait1() 135 qry->BindInt32(4, m_Annot->GetSatKey()); in Wait1() 137 qry->BindInt32(6, m_Annot->GetStart()); in Wait1() 138 qry->BindInt32(7, m_Annot->GetStop()); in Wait1() 152 m_Annot->GetAccession(), in Wait1() 153 m_Annot->GetAnnotName(), in Wait1() 154 m_Annot->GetVersion(), in Wait1() 155 m_Annot->GetSeqIdType(), in Wait1() [all …]
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H A D | delete.cpp | 62 , m_Annot(annot) in CCassNAnnotTaskDelete() 84 m_Annot->GetAccession(), in Wait1() 85 m_Annot->GetAnnotName(), in Wait1() 86 m_Annot->GetVersion(), in Wait1() 87 m_Annot->GetSeqIdType(), in Wait1() 88 m_Annot->GetModified(), in Wait1() 108 query->BindStr(0, m_Annot->GetAccession()); in Wait1() 109 query->BindInt16(1, m_Annot->GetVersion()); in Wait1() 111 query->BindStr(3, m_Annot->GetAnnotName()); in Wait1() 112 query->BindInt32(4, m_Annot->GetSatKey()); in Wait1() [all …]
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objmgr/ |
H A D | bioseq_base_info.cpp | 103 NON_CONST_ITERATE ( TAnnot, it, m_Annot ) { in x_DSAttachContents() 112 NON_CONST_ITERATE ( TAnnot, it, m_Annot ) { in x_DSDetachContents() 157 m_Annot.push_back(info); in x_SetAnnot() 169 ITERATE ( TAnnot, it, annot.m_Annot ) { in x_SetAnnot() 429 ITERATE ( TAnnot, it, m_Annot ) { in ResetAnnot() 432 m_Annot.clear(); in ResetAnnot() 456 m_Annot.push_back(info); in AddAnnot() 472 TAnnot::iterator info_it = find(m_Annot.begin(), m_Annot.end(), info); in RemoveAnnot() 476 _ASSERT(info_it != m_Annot.end()); in RemoveAnnot() 481 m_Annot.erase(info_it); in RemoveAnnot() [all …]
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H A D | seq_graph_handle.cpp | 48 : m_Annot(annot), in BEGIN_SCOPE() 59 m_Annot.Reset(); in Reset() 65 _ASSERT(m_Annot); in x_GetSeq_graph() 66 const CAnnotObject_Info& info = m_Annot.x_GetInfo().GetInfo(m_AnnotIndex); in x_GetSeq_graph() 83 return m_Annot.x_GetInfo().GetInfo(m_AnnotIndex).IsRemoved(); in IsRemoved()
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H A D | seq_align_handle.cpp | 48 : m_Annot(annot), in BEGIN_SCOPE() 59 m_Annot.Reset(); in Reset() 65 _ASSERT(m_Annot); in x_GetSeq_align() 66 const CAnnotObject_Info& info = m_Annot.x_GetInfo().GetInfo(m_AnnotIndex); in x_GetSeq_align() 83 return m_Annot.x_GetInfo().GetInfo(m_AnnotIndex).IsRemoved(); in IsRemoved()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objmgr/ |
H A D | bioseq_base_info.cpp | 103 NON_CONST_ITERATE ( TAnnot, it, m_Annot ) { in x_DSAttachContents() 112 NON_CONST_ITERATE ( TAnnot, it, m_Annot ) { in x_DSDetachContents() 157 m_Annot.push_back(info); in x_SetAnnot() 169 ITERATE ( TAnnot, it, annot.m_Annot ) { in x_SetAnnot() 429 ITERATE ( TAnnot, it, m_Annot ) { in ResetAnnot() 432 m_Annot.clear(); in ResetAnnot() 456 m_Annot.push_back(info); in AddAnnot() 472 TAnnot::iterator info_it = find(m_Annot.begin(), m_Annot.end(), info); in RemoveAnnot() 476 _ASSERT(info_it != m_Annot.end()); in RemoveAnnot() 481 m_Annot.erase(info_it); in RemoveAnnot() [all …]
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H A D | seq_align_handle.cpp | 48 : m_Annot(annot), in BEGIN_SCOPE() 59 m_Annot.Reset(); in Reset() 65 _ASSERT(m_Annot); in x_GetSeq_align() 66 const CAnnotObject_Info& info = m_Annot.x_GetInfo().GetInfo(m_AnnotIndex); in x_GetSeq_align() 83 return m_Annot.x_GetInfo().GetInfo(m_AnnotIndex).IsRemoved(); in IsRemoved()
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H A D | seq_graph_handle.cpp | 48 : m_Annot(annot), in BEGIN_SCOPE() 59 m_Annot.Reset(); in Reset() 65 _ASSERT(m_Annot); in x_GetSeq_graph() 66 const CAnnotObject_Info& info = m_Annot.x_GetInfo().GetInfo(m_AnnotIndex); in x_GetSeq_graph() 83 return m_Annot.x_GetInfo().GetInfo(m_AnnotIndex).IsRemoved(); in IsRemoved()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/blastfmt/ |
H A D | cgi_hit_matrix.cpp | 91 CRef <CSeq_annot> m_Annot; member in CBlastHitMatrixCGIApplication 157 m_Annot.Reset(new CSeq_annot); in x_GetSeqAnnot() 160 *is >> *m_Annot; in x_GetSeqAnnot() 163 m_Annot.Reset(); in x_GetSeqAnnot() 171 CRef <CSeq_annot> m_Annot(new CSeq_annot); in createAnnot() local 184 *in >> *m_Annot; in createAnnot() 189 cerr << MSerial_AsnText << *m_Annot; in createAnnot() 190 return m_Annot; in createAnnot() 198 …m_BlastHitMatrix = new CBlastHitMatrix((*m_Annot).GetData().GetAlign(),m_Height, m_Width,CImageIO:… in x_InitAppData()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objmgr/impl/ |
H A D | bioseq_base_info.hpp | 171 TAnnot m_Annot; member in CBioseq_Base_Info 214 return !m_Annot.empty() || x_NeedUpdate(fNeedUpdate_annot); in HasAnnots() 222 return m_Annot; in GetAnnot() 228 return m_Annot; in GetLoadedAnnot()
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H A D | seq_entry_edit_commands.hpp | 279 : m_Handle(handle), m_Annot(TTrait::Store(annot)), m_Scope(scope) in CAttachAnnot_EditCommand() 287 TTrait::Restore(m_Annot)); in Do() 312 TStorage m_Annot; member in CAttachAnnot_EditCommand
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objmgr/impl/ |
H A D | bioseq_base_info.hpp | 171 TAnnot m_Annot; member in CBioseq_Base_Info 214 return !m_Annot.empty() || x_NeedUpdate(fNeedUpdate_annot); in HasAnnots() 222 return m_Annot; in GetAnnot() 228 return m_Annot; in GetLoadedAnnot()
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H A D | seq_entry_edit_commands.hpp | 279 : m_Handle(handle), m_Annot(TTrait::Store(annot)), m_Scope(scope) in CAttachAnnot_EditCommand() 287 TTrait::Restore(m_Annot)); in Do() 312 TStorage m_Annot; member in CAttachAnnot_EditCommand
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objmgr/ |
H A D | seq_align_handle.hpp | 78 DECLARE_OPERATOR_BOOL(m_Annot && m_AnnotIndex != eNull && !IsRemoved()); 122 CSeq_annot_Handle m_Annot; member in CSeq_align_Handle 150 return m_Annot; in GetAnnot()
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H A D | seq_graph_handle.hpp | 76 DECLARE_OPERATOR_BOOL(m_Annot && m_AnnotIndex != eNull && !IsRemoved()); 129 CSeq_annot_Handle m_Annot; member in CSeq_graph_Handle 156 return m_Annot; in GetAnnot()
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H A D | seq_feat_handle.hpp | 823 CSeq_annot_EditHandle m_Annot; member in CSeq_annot_ftable_I 839 return m_Annot; in GetAnnot()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objmgr/ |
H A D | seq_align_handle.hpp | 78 DECLARE_OPERATOR_BOOL(m_Annot && m_AnnotIndex != eNull && !IsRemoved()); 122 CSeq_annot_Handle m_Annot; member in CSeq_align_Handle 150 return m_Annot; in GetAnnot()
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H A D | seq_graph_handle.hpp | 76 DECLARE_OPERATOR_BOOL(m_Annot && m_AnnotIndex != eNull && !IsRemoved()); 129 CSeq_annot_Handle m_Annot; member in CSeq_graph_Handle 156 return m_Annot; in GetAnnot()
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H A D | seq_feat_handle.hpp | 823 CSeq_annot_EditHandle m_Annot; member in CSeq_annot_ftable_I 839 return m_Annot; in GetAnnot()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/wig2table/ |
H A D | wig2table.cpp | 414 CRef<CSeq_annot> m_Annot; member in CWig2tableApplication 1074 if ( !m_Annot ) { in DumpAnnot() 1080 *m_Output << *m_Annot; in DumpAnnot() 1081 m_Annot = null; in DumpAnnot() 1091 if ( !m_Annot ) { in DumpChromValues() 1092 m_Annot = MakeAnnot(); in DumpChromValues() 1095 m_Annot->SetData().SetGraph().push_back(MakeGraph()); in DumpChromValues() 1098 m_Annot->SetData().SetSeq_table(*MakeTable()); in DumpChromValues()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/pubseq_gateway/impl/cassandra/nannot_task/ |
H A D | delete.hpp | 78 CNAnnotRecord * m_Annot; member in CCassNAnnotTaskDelete
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H A D | insert.hpp | 84 CNAnnotRecord * m_Annot; member in CCassNAnnotTaskInsert
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/objmgr/split_demo/ |
H A D | split_loader.hpp | 119 CRef<CSeq_annot> m_Annot; member
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H A D | split_loader.cpp | 124 chunk->x_LoadAnnot(annot->m_Place, *annot->m_Annot); in GetChunk() 325 data.m_Annot = &annot; in x_SplitAnnot()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/readers/ |
H A D | wiggle_reader.cpp | 803 if ( !m_Annot ) { in xDumpChromValues() 804 m_Annot = xCreateSeqAnnot(); in xDumpChromValues() 807 m_Annot->SetData().SetGraph().push_back(xMakeGraph()); in xDumpChromValues() 810 m_Annot->SetData().SetSeq_table(*xMakeTable()); in xDumpChromValues()
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