| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/blast/seqdb_reader/ |
| H A D | seqdbfile.cpp | 112 m_Lease (atlas), in CSeqDBExtFile()
131 m_Lease.Init(m_FileName); in CSeqDBExtFile()
178 offset = x_ReadSwapped(m_Lease, offset, & f_format_version); in CSeqDBIdxFile()
190 offset = x_ReadSwapped(m_Lease, offset, & f_db_seqtype); in CSeqDBIdxFile()
192 offset = x_ReadSwapped(m_Lease, offset, & m_Volume); in CSeqDBIdxFile()
195 offset = x_ReadSwapped(m_Lease, offset, & m_Title); in CSeqDBIdxFile()
197 offset = x_ReadSwapped(m_Lease, offset, & m_LMDBFile); in CSeqDBIdxFile()
200 offset = x_ReadSwapped(m_Lease, offset, & m_Date); in CSeqDBIdxFile()
203 offset = x_ReadSwapped(m_Lease, offset, & m_NumOIDs); in CSeqDBIdxFile()
206 offset = x_ReadSwapped(m_Lease, offset, & m_VolLen); in CSeqDBIdxFile()
[all …]
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| H A D | seqdboidlist.hpp | 140 m_Lease.Clear(); in UnLease()
288 CSeqDBFileMemMap m_Lease; member in CSeqDBOIDList
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| H A D | seqdboidlist.cpp | 51 m_Lease (atlas), in CSeqDBOIDList()
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| H A D | seqdbvol.cpp | 58 data = m_Lease.GetFileDataPtr(0); in GetSeqGI()
68 data = m_Lease.GetFileDataPtr(offset); in GetSeqGI()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/blast/seqdb_reader/ |
| H A D | seqdbfile.cpp | 112 m_Lease (atlas), in CSeqDBExtFile()
131 m_Lease.Init(m_FileName); in CSeqDBExtFile()
178 offset = x_ReadSwapped(m_Lease, offset, & f_format_version); in CSeqDBIdxFile()
190 offset = x_ReadSwapped(m_Lease, offset, & f_db_seqtype); in CSeqDBIdxFile()
192 offset = x_ReadSwapped(m_Lease, offset, & m_Volume); in CSeqDBIdxFile()
195 offset = x_ReadSwapped(m_Lease, offset, & m_Title); in CSeqDBIdxFile()
197 offset = x_ReadSwapped(m_Lease, offset, & m_LMDBFile); in CSeqDBIdxFile()
200 offset = x_ReadSwapped(m_Lease, offset, & m_Date); in CSeqDBIdxFile()
203 offset = x_ReadSwapped(m_Lease, offset, & m_NumOIDs); in CSeqDBIdxFile()
206 offset = x_ReadSwapped(m_Lease, offset, & m_VolLen); in CSeqDBIdxFile()
[all …]
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| H A D | seqdboidlist.hpp | 140 m_Lease.Clear(); in UnLease()
288 CSeqDBFileMemMap m_Lease; member in CSeqDBOIDList
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| H A D | seqdboidlist.cpp | 51 m_Lease (atlas), in CSeqDBOIDList()
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| H A D | seqdbvol.cpp | 58 data = m_Lease.GetFileDataPtr(0); in GetSeqGI()
68 data = m_Lease.GetFileDataPtr(offset); in GetSeqGI()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/blast/seqdb_reader/impl/ |
| H A D | seqdbfile.hpp | 295 m_Lease.Clear(); in UnLease()
316 m_File.ReadBytes(m_Lease, buf, start, end); in x_ReadBytes()
381 mutable CSeqDBFileMemMap m_Lease; member in CSeqDBExtFile
696 if(!m_Lease.IsMapped()) m_Lease.Init(); in GetAmbStartEnd()
710 if(!m_Lease.IsMapped()) m_Lease.Init(); in GetHdrStartEnd()
718 if(!m_Lease.IsMapped()) m_Lease.Init(); in GetSeqStartEnd()
731 if(!m_Lease.IsMapped()) m_Lease.Init(); in GetSeqStart()
824 const char *p = (const char *)m_Lease.GetFileDataPtr(start); in GetFileDataPtr()
912 const char *p = (const char *)m_Lease.GetFileDataPtr(start); in GetFileDataPtr()
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| H A D | seqdbvol.hpp | 64 : m_Lease (atlas), in CSeqDBGiIndex()
67 m_Lease.Init(dbname + '.' + prot_nucl + "og"); in CSeqDBGiIndex()
72 m_Lease.Clear(); in ~CSeqDBGiIndex()
85 CSeqDBFileMemMap m_Lease; member in CSeqDBGiIndex
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objtools/blast/seqdb_reader/impl/ |
| H A D | seqdbfile.hpp | 295 m_Lease.Clear(); in UnLease()
316 m_File.ReadBytes(m_Lease, buf, start, end); in x_ReadBytes()
381 mutable CSeqDBFileMemMap m_Lease; member in CSeqDBExtFile
696 if(!m_Lease.IsMapped()) m_Lease.Init(); in GetAmbStartEnd()
710 if(!m_Lease.IsMapped()) m_Lease.Init(); in GetHdrStartEnd()
718 if(!m_Lease.IsMapped()) m_Lease.Init(); in GetSeqStartEnd()
731 if(!m_Lease.IsMapped()) m_Lease.Init(); in GetSeqStart()
824 const char *p = (const char *)m_Lease.GetFileDataPtr(start); in GetFileDataPtr()
912 const char *p = (const char *)m_Lease.GetFileDataPtr(start); in GetFileDataPtr()
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| H A D | seqdbvol.hpp | 64 : m_Lease (atlas), in CSeqDBGiIndex()
67 m_Lease.Init(dbname + '.' + prot_nucl + "og"); in CSeqDBGiIndex()
72 m_Lease.Clear(); in ~CSeqDBGiIndex()
85 CSeqDBFileMemMap m_Lease; member in CSeqDBGiIndex
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