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Searched refs:m_Subtype (Results 1 – 25 of 29) sorted by relevance

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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objmgr/util/
H A Dautodef_source_desc.cpp274 m_Subtype = subtype; in CAutoDefSourceModifierInfo()
282 m_Subtype = other.GetSubtype(); in CAutoDefSourceModifierInfo()
295 if (m_Subtype == COrgMod::eSubtype_strain) { in GetRank()
297 } else if (m_Subtype == COrgMod::eSubtype_isolate) { in GetRank()
299 } else if (m_Subtype == COrgMod::eSubtype_cultivar) { in GetRank()
303 } else if (m_Subtype == COrgMod::eSubtype_ecotype) { in GetRank()
305 } else if (m_Subtype == COrgMod::eSubtype_type) { in GetRank()
307 } else if (m_Subtype == COrgMod::eSubtype_serotype) { in GetRank()
311 } else if (m_Subtype == COrgMod::eSubtype_breed) { in GetRank()
315 if (m_Subtype == CSubSource::eSubtype_transgenic) { in GetRank()
[all …]
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objmgr/util/
H A Dautodef_source_desc.cpp274 m_Subtype = subtype; in CAutoDefSourceModifierInfo()
282 m_Subtype = other.GetSubtype(); in CAutoDefSourceModifierInfo()
295 if (m_Subtype == COrgMod::eSubtype_strain) { in GetRank()
297 } else if (m_Subtype == COrgMod::eSubtype_isolate) { in GetRank()
299 } else if (m_Subtype == COrgMod::eSubtype_cultivar) { in GetRank()
303 } else if (m_Subtype == COrgMod::eSubtype_ecotype) { in GetRank()
305 } else if (m_Subtype == COrgMod::eSubtype_type) { in GetRank()
307 } else if (m_Subtype == COrgMod::eSubtype_serotype) { in GetRank()
311 } else if (m_Subtype == COrgMod::eSubtype_breed) { in GetRank()
315 if (m_Subtype == CSubSource::eSubtype_transgenic) { in GetRank()
[all …]
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objtools/edit/
H A Dtext_desc_field.hpp60 virtual CSeqdesc::E_Choice GetDescriptorSubtype() { return m_Subtype; } ; in GetDescriptorSubtype()
64 CSeqdesc::E_Choice GetSubtype() { return m_Subtype; }; in GetSubtype()
65 void SetSubtype(CSeqdesc::E_Choice subtype) { m_Subtype = subtype; }; in SetSubtype()
68 CSeqdesc::E_Choice m_Subtype; member in CTextDescriptorField
75 CCommentDescField () { m_Subtype = CSeqdesc::e_Comment; }; in CCommentDescField()
88 CDefinitionLineField () { m_Subtype = CSeqdesc::e_Title; }; in CDefinitionLineField()
H A Dgb_block_field.hpp60 m_StringConstraint(NULL) { m_Subtype = CSeqdesc::e_Genbank; }; in CGBBlockField()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/edit/
H A Dtext_desc_field.hpp60 virtual CSeqdesc::E_Choice GetDescriptorSubtype() { return m_Subtype; } ; in GetDescriptorSubtype()
64 CSeqdesc::E_Choice GetSubtype() { return m_Subtype; }; in GetSubtype()
65 void SetSubtype(CSeqdesc::E_Choice subtype) { m_Subtype = subtype; }; in SetSubtype()
68 CSeqdesc::E_Choice m_Subtype; member in CTextDescriptorField
75 CCommentDescField () { m_Subtype = CSeqdesc::e_Comment; }; in CCommentDescField()
88 CDefinitionLineField () { m_Subtype = CSeqdesc::e_Title; }; in CDefinitionLineField()
H A Dgb_block_field.hpp60 m_StringConstraint(NULL) { m_Subtype = CSeqdesc::e_Genbank; }; in CGBBlockField()
/dports/editors/calligra/calligra-3.2.1/filters/karbon/xfig/
H A DXFigDocument.h275 XFigEllipseObject() : XFigAbstractGraphObject(EllipseId), m_Subtype(EllipseByRadii) {} in XFigEllipseObject()
277 void setSubtype( Subtype subtype ) { m_Subtype = subtype; } in setSubtype()
283 Subtype subtype() const { return m_Subtype; } in subtype()
291 Subtype m_Subtype;
386 XFigSplineObject() : XFigAbstractGraphObject(SplineId), m_Subtype(OpenApproximated) {} in XFigSplineObject()
388 void setSubtype( Subtype subtype ) { m_Subtype = subtype; } in setSubtype()
391 Subtype subtype() const { return m_Subtype; } in subtype()
394 Subtype m_Subtype;
406 void setSubtype( Subtype subtype ) { m_Subtype = subtype; } in setSubtype()
412 Subtype subtype() const { return m_Subtype; } in subtype()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/test/objmgr/
H A Dfeat_unit_test.cpp63 CSeqFeatData::ESubtype m_Subtype; member
118 info.m_Subtype = it->GetFeatSubtype(); in BOOST_AUTO_TEST_CASE()
150 CSeqFeatData::GetTypeFromSubtype(it->m_Subtype); in BOOST_AUTO_TEST_CASE()
154 found = tse.GetFeaturesWithId(it->m_Subtype, it->m_Id); in BOOST_AUTO_TEST_CASE()
163 CSeqFeatData::GetTypeFromSubtype(it->m_Subtype); in BOOST_AUTO_TEST_CASE()
167 found = tse.GetFeaturesWithXref(it->m_Subtype, it->m_Xref); in BOOST_AUTO_TEST_CASE()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/biosample_chk/
H A Dsrc_table_column.cpp158 if (objects::CSubSource::NeedsNoText(m_Subtype)) { in AddToBioSource()
159 CRef<objects::CSubSource> s(new objects::CSubSource(m_Subtype, " ")); in AddToBioSource()
174 if ((*it)->GetSubtype() == m_Subtype) { in ClearInBioSource()
194 if ((*it)->GetSubtype() == m_Subtype && (*it)->IsSetName()) { in GetFromBioSource()
207 if (m_Subtype == objects::CSubSource::eSubtype_other) { in GetLabel()
210 return objects::CSubSource::GetSubtypeName(m_Subtype); in GetLabel()
219 CRef<objects::COrgMod> s(new objects::COrgMod(m_Subtype, newValue)); in AddToBioSource()
230 if ((*it)->GetSubtype() == m_Subtype) { in ClearInBioSource()
247 if ((*it)->GetSubtype() == m_Subtype && (*it)->IsSetSubname()) { in GetFromBioSource()
260 if (m_Subtype == objects::COrgMod::eSubtype_other) { in GetLabel()
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H A Dsrc_table_column.hpp113 CSrcTableSubSourceColumn(objects::CSubSource::TSubtype subtype) { m_Subtype = subtype; }; in CSrcTableSubSourceColumn()
122 objects::CSubSource::TSubtype m_Subtype; member in CSrcTableSubSourceColumn
128 CSrcTableOrgModColumn(objects::COrgMod::TSubtype subtype) { m_Subtype = subtype; }; in CSrcTableOrgModColumn()
137 objects::COrgMod::TSubtype m_Subtype; member in CSrcTableOrgModColumn
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/edit/
H A Dtext_desc_field.cpp51 CSeqdesc_CI desc_ci(bsh, m_Subtype); in BEGIN_SCOPE()
93 CSeqdesc_CI desc_ci(bsh, m_Subtype); in GetApplyObjects()
101 CRef<CApplyObject> new_obj(new CApplyObject(bsh, m_Subtype)); in GetApplyObjects()
121 if (obj_desc->Which() == m_Subtype) { in GetRelatedObjects()
146 if (obj_desc->Which() == m_Subtype) { in GetRelatedObjects()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/edit/
H A Dtext_desc_field.cpp51 CSeqdesc_CI desc_ci(bsh, m_Subtype); in BEGIN_SCOPE()
93 CSeqdesc_CI desc_ci(bsh, m_Subtype); in GetApplyObjects()
101 CRef<CApplyObject> new_obj(new CApplyObject(bsh, m_Subtype)); in GetApplyObjects()
121 if (obj_desc->Which() == m_Subtype) { in GetRelatedObjects()
146 if (obj_desc->Which() == m_Subtype) { in GetRelatedObjects()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objmgr/util/
H A Dautodef_source_desc.hpp80 int m_Subtype; member in CAutoDefSourceModifierInfo
93 return m_Subtype; in GetSubtype()
H A Dindexer.hpp899 CSeqFeatData::ESubtype GetSubtype (void) const { return m_Subtype; } in GetSubtype()
931 CSeqFeatData::ESubtype m_Subtype; member in CFeatureIndex
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objmgr/util/
H A Dautodef_source_desc.hpp80 int m_Subtype; member in CAutoDefSourceModifierInfo
93 return m_Subtype; in GetSubtype()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/cgi/
H A Dcgiapp.cpp1681 this_wc = m_Subtype == "*"; in operator <()
1682 other_wc = entry.m_Subtype == "*"; in operator <()
1692 if (m_Subtype != entry.m_Subtype) return m_Subtype < entry.m_Subtype; in operator <()
1712 NStr::TruncateSpacesInPlace(entry.m_Subtype); in ParseAcceptHeader()
1803 content_type = it->m_Type + "/" + it->m_Subtype; in ProcessHelpRequest()
1809 string fname_accept = "help." + it->m_Subtype + it->m_MediaRangeParams; in ProcessHelpRequest()
1812 content_type = it->m_Type + "/" + it->m_Subtype; in ProcessHelpRequest()
1941 if (it->m_Subtype == "xml" || it->m_Subtype == "json" || in ProcessVersionRequest()
1942 (it->m_Type == "text" && it->m_Subtype == "plain")) { in ProcessVersionRequest()
1943 format = it->m_Subtype; in ProcessVersionRequest()
[all …]
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/cgi/
H A Dcgiapp.cpp1681 this_wc = m_Subtype == "*"; in operator <()
1682 other_wc = entry.m_Subtype == "*"; in operator <()
1692 if (m_Subtype != entry.m_Subtype) return m_Subtype < entry.m_Subtype; in operator <()
1712 NStr::TruncateSpacesInPlace(entry.m_Subtype); in ParseAcceptHeader()
1803 content_type = it->m_Type + "/" + it->m_Subtype; in ProcessHelpRequest()
1809 string fname_accept = "help." + it->m_Subtype + it->m_MediaRangeParams; in ProcessHelpRequest()
1812 content_type = it->m_Type + "/" + it->m_Subtype; in ProcessHelpRequest()
1941 if (it->m_Subtype == "xml" || it->m_Subtype == "json" || in ProcessVersionRequest()
1942 (it->m_Type == "text" && it->m_Subtype == "plain")) { in ProcessVersionRequest()
1943 format = it->m_Subtype; in ProcessVersionRequest()
[all …]
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objects/seqfeat/
H A DSeqFeatData.hpp532 CSeqFeatData::ESubtype m_Subtype; member
559 m_FeatDataInfo.m_Subtype = eSubtype_any; in InvalidateSubtype()
603 , m_Subtype(subtype) in CFeatListItem()
616 int m_Subtype = 0; ///< Feature subtype or eSubtype_any for default values. member in CFeatListItem
631 { return m_Subtype; } in GetSubtype()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objects/seqfeat/
H A DSeqFeatData.hpp532 CSeqFeatData::ESubtype m_Subtype; member
559 m_FeatDataInfo.m_Subtype = eSubtype_any; in InvalidateSubtype()
603 , m_Subtype(subtype) in CFeatListItem()
616 int m_Subtype = 0; ///< Feature subtype or eSubtype_any for default values. member in CFeatListItem
631 { return m_Subtype; } in GetSubtype()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objects/seqfeat/
H A DSeqFeatData.cpp68 CSeqFeatData::ESubtype m_Subtype; member
263 m_FeatDataInfo.m_Subtype = eSubtype_prot; in x_InitFeatDataInfo()
320 m_FeatDataInfo.m_Subtype = eSubtype_imp; in x_InitFeatDataInfo()
322 m_FeatDataInfo.m_Subtype = result->m_Subtype; in x_InitFeatDataInfo()
335 m_FeatDataInfo.m_Subtype = eSubtype_bad; in x_InitFeatDataInfo()
353 if (m_FeatDataInfo.m_Subtype == eSubtype_any) { in GetKey()
366 return m_FeatDataInfo.m_Subtype; in GetSubtype()
576 CSeqFeatData::ESubtype m_Subtype; member
740 table[p->m_Subtype] = e_Imp; in s_InitSubtypesTable()
4019 CSeqFeatData::ESubtype m_Subtype; member
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objects/seqfeat/
H A DSeqFeatData.cpp68 CSeqFeatData::ESubtype m_Subtype; member
263 m_FeatDataInfo.m_Subtype = eSubtype_prot; in x_InitFeatDataInfo()
320 m_FeatDataInfo.m_Subtype = eSubtype_imp; in x_InitFeatDataInfo()
322 m_FeatDataInfo.m_Subtype = result->m_Subtype; in x_InitFeatDataInfo()
335 m_FeatDataInfo.m_Subtype = eSubtype_bad; in x_InitFeatDataInfo()
353 if (m_FeatDataInfo.m_Subtype == eSubtype_any) { in GetKey()
366 return m_FeatDataInfo.m_Subtype; in GetSubtype()
576 CSeqFeatData::ESubtype m_Subtype; member
740 table[p->m_Subtype] = e_Imp; in s_InitSubtypesTable()
4019 CSeqFeatData::ESubtype m_Subtype; member
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/validator/
H A Dtax_validation_and_cleanup.hpp190 CQualLookupMap(COrgMod::ESubtype subtype) : m_Subtype(subtype), m_Populated(false) {}; in CQualLookupMap()
246 COrgMod::ESubtype m_Subtype; member in CQualLookupMap
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/cgi/
H A Dcgiapp.hpp351 string m_Subtype; member
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/cgi/
H A Dcgiapp.hpp351 string m_Subtype; member
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/validator/
H A Dtax_validation_and_cleanup.cpp395 && (*mod_it)->GetSubtype() == m_Subtype in AddDesc()
427 && (*mod_it)->GetSubtype() == m_Subtype in AddFeat()
454 && (*mod_it)->GetSubtype() == m_Subtype in AddOrg()
527 error_message = "Unexpected taxonomy responses for " + COrgMod::GetSubtypeName(m_Subtype); in IncrementalUpdate()

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