/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objmgr/util/ |
H A D | autodef_source_desc.cpp | 274 m_Subtype = subtype; in CAutoDefSourceModifierInfo() 282 m_Subtype = other.GetSubtype(); in CAutoDefSourceModifierInfo() 295 if (m_Subtype == COrgMod::eSubtype_strain) { in GetRank() 297 } else if (m_Subtype == COrgMod::eSubtype_isolate) { in GetRank() 299 } else if (m_Subtype == COrgMod::eSubtype_cultivar) { in GetRank() 303 } else if (m_Subtype == COrgMod::eSubtype_ecotype) { in GetRank() 305 } else if (m_Subtype == COrgMod::eSubtype_type) { in GetRank() 307 } else if (m_Subtype == COrgMod::eSubtype_serotype) { in GetRank() 311 } else if (m_Subtype == COrgMod::eSubtype_breed) { in GetRank() 315 if (m_Subtype == CSubSource::eSubtype_transgenic) { in GetRank() [all …]
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objmgr/util/ |
H A D | autodef_source_desc.cpp | 274 m_Subtype = subtype; in CAutoDefSourceModifierInfo() 282 m_Subtype = other.GetSubtype(); in CAutoDefSourceModifierInfo() 295 if (m_Subtype == COrgMod::eSubtype_strain) { in GetRank() 297 } else if (m_Subtype == COrgMod::eSubtype_isolate) { in GetRank() 299 } else if (m_Subtype == COrgMod::eSubtype_cultivar) { in GetRank() 303 } else if (m_Subtype == COrgMod::eSubtype_ecotype) { in GetRank() 305 } else if (m_Subtype == COrgMod::eSubtype_type) { in GetRank() 307 } else if (m_Subtype == COrgMod::eSubtype_serotype) { in GetRank() 311 } else if (m_Subtype == COrgMod::eSubtype_breed) { in GetRank() 315 if (m_Subtype == CSubSource::eSubtype_transgenic) { in GetRank() [all …]
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objtools/edit/ |
H A D | text_desc_field.hpp | 60 virtual CSeqdesc::E_Choice GetDescriptorSubtype() { return m_Subtype; } ; in GetDescriptorSubtype() 64 CSeqdesc::E_Choice GetSubtype() { return m_Subtype; }; in GetSubtype() 65 void SetSubtype(CSeqdesc::E_Choice subtype) { m_Subtype = subtype; }; in SetSubtype() 68 CSeqdesc::E_Choice m_Subtype; member in CTextDescriptorField 75 CCommentDescField () { m_Subtype = CSeqdesc::e_Comment; }; in CCommentDescField() 88 CDefinitionLineField () { m_Subtype = CSeqdesc::e_Title; }; in CDefinitionLineField()
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H A D | gb_block_field.hpp | 60 m_StringConstraint(NULL) { m_Subtype = CSeqdesc::e_Genbank; }; in CGBBlockField()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/edit/ |
H A D | text_desc_field.hpp | 60 virtual CSeqdesc::E_Choice GetDescriptorSubtype() { return m_Subtype; } ; in GetDescriptorSubtype() 64 CSeqdesc::E_Choice GetSubtype() { return m_Subtype; }; in GetSubtype() 65 void SetSubtype(CSeqdesc::E_Choice subtype) { m_Subtype = subtype; }; in SetSubtype() 68 CSeqdesc::E_Choice m_Subtype; member in CTextDescriptorField 75 CCommentDescField () { m_Subtype = CSeqdesc::e_Comment; }; in CCommentDescField() 88 CDefinitionLineField () { m_Subtype = CSeqdesc::e_Title; }; in CDefinitionLineField()
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H A D | gb_block_field.hpp | 60 m_StringConstraint(NULL) { m_Subtype = CSeqdesc::e_Genbank; }; in CGBBlockField()
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/dports/editors/calligra/calligra-3.2.1/filters/karbon/xfig/ |
H A D | XFigDocument.h | 275 XFigEllipseObject() : XFigAbstractGraphObject(EllipseId), m_Subtype(EllipseByRadii) {} in XFigEllipseObject() 277 void setSubtype( Subtype subtype ) { m_Subtype = subtype; } in setSubtype() 283 Subtype subtype() const { return m_Subtype; } in subtype() 291 Subtype m_Subtype; 386 XFigSplineObject() : XFigAbstractGraphObject(SplineId), m_Subtype(OpenApproximated) {} in XFigSplineObject() 388 void setSubtype( Subtype subtype ) { m_Subtype = subtype; } in setSubtype() 391 Subtype subtype() const { return m_Subtype; } in subtype() 394 Subtype m_Subtype; 406 void setSubtype( Subtype subtype ) { m_Subtype = subtype; } in setSubtype() 412 Subtype subtype() const { return m_Subtype; } in subtype() [all …]
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/test/objmgr/ |
H A D | feat_unit_test.cpp | 63 CSeqFeatData::ESubtype m_Subtype; member 118 info.m_Subtype = it->GetFeatSubtype(); in BOOST_AUTO_TEST_CASE() 150 CSeqFeatData::GetTypeFromSubtype(it->m_Subtype); in BOOST_AUTO_TEST_CASE() 154 found = tse.GetFeaturesWithId(it->m_Subtype, it->m_Id); in BOOST_AUTO_TEST_CASE() 163 CSeqFeatData::GetTypeFromSubtype(it->m_Subtype); in BOOST_AUTO_TEST_CASE() 167 found = tse.GetFeaturesWithXref(it->m_Subtype, it->m_Xref); in BOOST_AUTO_TEST_CASE()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/biosample_chk/ |
H A D | src_table_column.cpp | 158 if (objects::CSubSource::NeedsNoText(m_Subtype)) { in AddToBioSource() 159 CRef<objects::CSubSource> s(new objects::CSubSource(m_Subtype, " ")); in AddToBioSource() 174 if ((*it)->GetSubtype() == m_Subtype) { in ClearInBioSource() 194 if ((*it)->GetSubtype() == m_Subtype && (*it)->IsSetName()) { in GetFromBioSource() 207 if (m_Subtype == objects::CSubSource::eSubtype_other) { in GetLabel() 210 return objects::CSubSource::GetSubtypeName(m_Subtype); in GetLabel() 219 CRef<objects::COrgMod> s(new objects::COrgMod(m_Subtype, newValue)); in AddToBioSource() 230 if ((*it)->GetSubtype() == m_Subtype) { in ClearInBioSource() 247 if ((*it)->GetSubtype() == m_Subtype && (*it)->IsSetSubname()) { in GetFromBioSource() 260 if (m_Subtype == objects::COrgMod::eSubtype_other) { in GetLabel() [all …]
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H A D | src_table_column.hpp | 113 CSrcTableSubSourceColumn(objects::CSubSource::TSubtype subtype) { m_Subtype = subtype; }; in CSrcTableSubSourceColumn() 122 objects::CSubSource::TSubtype m_Subtype; member in CSrcTableSubSourceColumn 128 CSrcTableOrgModColumn(objects::COrgMod::TSubtype subtype) { m_Subtype = subtype; }; in CSrcTableOrgModColumn() 137 objects::COrgMod::TSubtype m_Subtype; member in CSrcTableOrgModColumn
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/edit/ |
H A D | text_desc_field.cpp | 51 CSeqdesc_CI desc_ci(bsh, m_Subtype); in BEGIN_SCOPE() 93 CSeqdesc_CI desc_ci(bsh, m_Subtype); in GetApplyObjects() 101 CRef<CApplyObject> new_obj(new CApplyObject(bsh, m_Subtype)); in GetApplyObjects() 121 if (obj_desc->Which() == m_Subtype) { in GetRelatedObjects() 146 if (obj_desc->Which() == m_Subtype) { in GetRelatedObjects()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/edit/ |
H A D | text_desc_field.cpp | 51 CSeqdesc_CI desc_ci(bsh, m_Subtype); in BEGIN_SCOPE() 93 CSeqdesc_CI desc_ci(bsh, m_Subtype); in GetApplyObjects() 101 CRef<CApplyObject> new_obj(new CApplyObject(bsh, m_Subtype)); in GetApplyObjects() 121 if (obj_desc->Which() == m_Subtype) { in GetRelatedObjects() 146 if (obj_desc->Which() == m_Subtype) { in GetRelatedObjects()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objmgr/util/ |
H A D | autodef_source_desc.hpp | 80 int m_Subtype; member in CAutoDefSourceModifierInfo 93 return m_Subtype; in GetSubtype()
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H A D | indexer.hpp | 899 CSeqFeatData::ESubtype GetSubtype (void) const { return m_Subtype; } in GetSubtype() 931 CSeqFeatData::ESubtype m_Subtype; member in CFeatureIndex
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objmgr/util/ |
H A D | autodef_source_desc.hpp | 80 int m_Subtype; member in CAutoDefSourceModifierInfo 93 return m_Subtype; in GetSubtype()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/cgi/ |
H A D | cgiapp.cpp | 1681 this_wc = m_Subtype == "*"; in operator <() 1682 other_wc = entry.m_Subtype == "*"; in operator <() 1692 if (m_Subtype != entry.m_Subtype) return m_Subtype < entry.m_Subtype; in operator <() 1712 NStr::TruncateSpacesInPlace(entry.m_Subtype); in ParseAcceptHeader() 1803 content_type = it->m_Type + "/" + it->m_Subtype; in ProcessHelpRequest() 1809 string fname_accept = "help." + it->m_Subtype + it->m_MediaRangeParams; in ProcessHelpRequest() 1812 content_type = it->m_Type + "/" + it->m_Subtype; in ProcessHelpRequest() 1941 if (it->m_Subtype == "xml" || it->m_Subtype == "json" || in ProcessVersionRequest() 1942 (it->m_Type == "text" && it->m_Subtype == "plain")) { in ProcessVersionRequest() 1943 format = it->m_Subtype; in ProcessVersionRequest() [all …]
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/cgi/ |
H A D | cgiapp.cpp | 1681 this_wc = m_Subtype == "*"; in operator <() 1682 other_wc = entry.m_Subtype == "*"; in operator <() 1692 if (m_Subtype != entry.m_Subtype) return m_Subtype < entry.m_Subtype; in operator <() 1712 NStr::TruncateSpacesInPlace(entry.m_Subtype); in ParseAcceptHeader() 1803 content_type = it->m_Type + "/" + it->m_Subtype; in ProcessHelpRequest() 1809 string fname_accept = "help." + it->m_Subtype + it->m_MediaRangeParams; in ProcessHelpRequest() 1812 content_type = it->m_Type + "/" + it->m_Subtype; in ProcessHelpRequest() 1941 if (it->m_Subtype == "xml" || it->m_Subtype == "json" || in ProcessVersionRequest() 1942 (it->m_Type == "text" && it->m_Subtype == "plain")) { in ProcessVersionRequest() 1943 format = it->m_Subtype; in ProcessVersionRequest() [all …]
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objects/seqfeat/ |
H A D | SeqFeatData.hpp | 532 CSeqFeatData::ESubtype m_Subtype; member 559 m_FeatDataInfo.m_Subtype = eSubtype_any; in InvalidateSubtype() 603 , m_Subtype(subtype) in CFeatListItem() 616 int m_Subtype = 0; ///< Feature subtype or eSubtype_any for default values. member in CFeatListItem 631 { return m_Subtype; } in GetSubtype()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objects/seqfeat/ |
H A D | SeqFeatData.hpp | 532 CSeqFeatData::ESubtype m_Subtype; member 559 m_FeatDataInfo.m_Subtype = eSubtype_any; in InvalidateSubtype() 603 , m_Subtype(subtype) in CFeatListItem() 616 int m_Subtype = 0; ///< Feature subtype or eSubtype_any for default values. member in CFeatListItem 631 { return m_Subtype; } in GetSubtype()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objects/seqfeat/ |
H A D | SeqFeatData.cpp | 68 CSeqFeatData::ESubtype m_Subtype; member 263 m_FeatDataInfo.m_Subtype = eSubtype_prot; in x_InitFeatDataInfo() 320 m_FeatDataInfo.m_Subtype = eSubtype_imp; in x_InitFeatDataInfo() 322 m_FeatDataInfo.m_Subtype = result->m_Subtype; in x_InitFeatDataInfo() 335 m_FeatDataInfo.m_Subtype = eSubtype_bad; in x_InitFeatDataInfo() 353 if (m_FeatDataInfo.m_Subtype == eSubtype_any) { in GetKey() 366 return m_FeatDataInfo.m_Subtype; in GetSubtype() 576 CSeqFeatData::ESubtype m_Subtype; member 740 table[p->m_Subtype] = e_Imp; in s_InitSubtypesTable() 4019 CSeqFeatData::ESubtype m_Subtype; member [all …]
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objects/seqfeat/ |
H A D | SeqFeatData.cpp | 68 CSeqFeatData::ESubtype m_Subtype; member 263 m_FeatDataInfo.m_Subtype = eSubtype_prot; in x_InitFeatDataInfo() 320 m_FeatDataInfo.m_Subtype = eSubtype_imp; in x_InitFeatDataInfo() 322 m_FeatDataInfo.m_Subtype = result->m_Subtype; in x_InitFeatDataInfo() 335 m_FeatDataInfo.m_Subtype = eSubtype_bad; in x_InitFeatDataInfo() 353 if (m_FeatDataInfo.m_Subtype == eSubtype_any) { in GetKey() 366 return m_FeatDataInfo.m_Subtype; in GetSubtype() 576 CSeqFeatData::ESubtype m_Subtype; member 740 table[p->m_Subtype] = e_Imp; in s_InitSubtypesTable() 4019 CSeqFeatData::ESubtype m_Subtype; member [all …]
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/validator/ |
H A D | tax_validation_and_cleanup.hpp | 190 CQualLookupMap(COrgMod::ESubtype subtype) : m_Subtype(subtype), m_Populated(false) {}; in CQualLookupMap() 246 COrgMod::ESubtype m_Subtype; member in CQualLookupMap
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/cgi/ |
H A D | cgiapp.hpp | 351 string m_Subtype; member
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/cgi/ |
H A D | cgiapp.hpp | 351 string m_Subtype; member
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/validator/ |
H A D | tax_validation_and_cleanup.cpp | 395 && (*mod_it)->GetSubtype() == m_Subtype in AddDesc() 427 && (*mod_it)->GetSubtype() == m_Subtype in AddFeat() 454 && (*mod_it)->GetSubtype() == m_Subtype in AddOrg() 527 error_message = "Unexpected taxonomy responses for " + COrgMod::GetSubtypeName(m_Subtype); in IncrementalUpdate()
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