Searched refs:m_UserHits (Results 1 – 5 of 5) sorted by relevance
405 {m_Mode = fNonStandard; return m_UserHits;} in SetUserConstraints()412 {return m_UserHits;} in GetUserConstraints()817 TConstraints m_UserHits; member in CMultiAlignerOptions
721 CHitList m_UserHits; member in CMultiAligner
176 ITERATE(TConstraints, it, m_UserHits) { in Validate()
89 m_UserHits.PurgeAllHits(); in x_InitParams()93 m_UserHits.AddToHitList(new CHit(it->seq1_index, it->seq2_index, in x_InitParams()163 for (int i = 0; i < m_UserHits.Size(); i++) { in x_ValidateUserHits()164 CHit* hit = m_UserHits.GetHit(i); in x_ValidateUserHits()782 for (int i=0;i < m_UserHits.Size();i++) { in x_FindQueryClusters()783 CHit* hit = m_UserHits.GetHit(i); in x_FindQueryClusters()
1835 for (int i = 0; i < m_UserHits.Size(); i++) { in x_BuildAlignmentIterative()1836 CHit *hit = m_UserHits.GetHit(i); in x_BuildAlignmentIterative()1957 for (int i = 0; i < m_UserHits.Size(); i++) { in x_BuildAlignmentIterative()1958 CHit *hit = m_UserHits.GetHit(i); in x_BuildAlignmentIterative()