Searched refs:m_aln (Results 1 – 4 of 4) sorted by relevance
/dports/biology/bwa/bwa-0.7.17/ |
H A D | bwtgap.c | 115 int max_entries = 0, j, _j, n_aln, m_aln; in bwt_match_gap() local 118 m_aln = 4; n_aln = 0; in bwt_match_gap() 119 aln = (bwt_aln1_t*)calloc(m_aln, sizeof(bwt_aln1_t)); in bwt_match_gap() 184 if (n_aln == m_aln) { in bwt_match_gap() 185 m_aln <<= 1; in bwt_match_gap() 186 aln = (bwt_aln1_t*)realloc(aln, m_aln * sizeof(bwt_aln1_t)); in bwt_match_gap() 187 memset(aln + m_aln/2, 0, m_aln/2*sizeof(bwt_aln1_t)); in bwt_match_gap()
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H A D | bwase.c | 510 int i, n_seqs, m_aln; in bwa_sai2sam_se_core() local 527 m_aln = 0; in bwa_sai2sam_se_core() 547 if (n_aln > m_aln) { in bwa_sai2sam_se_core() 548 m_aln = n_aln; in bwa_sai2sam_se_core() 549 aln = (bwt_aln1_t*)realloc(aln, sizeof(bwt_aln1_t) * m_aln); in bwa_sai2sam_se_core()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/sequence/ |
H A D | feature_generator.hpp | 160 const CSeq_align& m_aln; member
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H A D | gene_model.cpp | 376 : m_aln(aln), m_scope(scope), m_genomic_row(-1) in SMapper() 423 if(m_aln.GetSegs().IsSpliced()) { in GetRnaLoc() 424 rna_loc = x_GetLocFromSplicedExons(m_aln); in GetRnaLoc() 426 const CSeq_id& id = m_aln.GetSeq_id(GetRnaRow()); in GetRnaLoc() 523 if(m_aln.GetSeqStart(0) > m_allowed_unaligned) { in x_GetLocFromSplicedExons() 530 if(m_aln.GetSeqStop(0) + 1 + m_allowed_unaligned < polya_pos) { in x_GetLocFromSplicedExons() 541 (new CSeq_loc_Mapper(m_aln, m_aln.GetSeq_id(m_genomic_row), in x_Mapper()
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