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Searched refs:m_organism (Results 1 – 15 of 15) sorted by relevance

/dports/biology/avida/avida-2.12.4-src/avida-core/source/cpu/
H A DcHardwareCPU.cc3929 if(m_organism->GetOrgInterface().HasOpinion(m_organism)) { in Inst_SenseOpinionResourceQuantity()
3980 if(m_organism->GetOrgInterface().HasOpinion(m_organism)) { in Inst_SenseDiffFaced()
6206 …if(m_organism->GetOrgInterface().HasOpinion(m_organism)) opinion = m_organism->GetOpinion().first; in Inst_RotateUphill()
8980 if (m_organism->GetOrgInterface().HasOpinion(m_organism)) { in Inst_GetOpinion()
8994 if (m_organism->GetOrgInterface().HasOpinion(m_organism)) { in Inst_GetOpinionOnly_ZeroIfNone()
9007 m_organism->GetOrgInterface().ClearOpinion(m_organism); in Inst_ClearOpinion()
9193 m_organism->SetCellData(m_organism->GetID()); in Inst_MarkCellWithID()
9710 m_organism->SetReputation(m_organism->GetReputation() + 1); in Inst_Pose()
9958 if (m_organism->GetOrgInterface().HasOpinion(m_organism)) { in Inst_JoinGroup()
9991 if (m_organism->GetOrgInterface().HasOpinion(m_organism)) { in Inst_JoinGroup()
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H A DcHardwareExperimental.cc897 if (m_organism->HasOpinion()) fp << m_organism->GetOpinion().first << " "; in PrintMiniTraceStatus()
2929 m_organism->Die(ctx); in Inst_Die()
3214 if(m_organism->HasOpinion()) group = m_organism->GetOpinion().first; in Inst_RotateUphill()
4619 if (m_organism->GetOrgInterface().HasOpinion(m_organism)) { in Inst_GetOpinion()
4644 if (m_organism->GetOrgInterface().HasOpinion(m_organism)) { in Inst_JoinGroup()
4670 m_organism->GetOrgInterface().SetOpinion(prop_group_id, m_organism); in Inst_JoinGroup()
4673 if (m_organism->GetOrgInterface().HasOpinion(m_organism)) { in Inst_JoinGroup()
5777 if (!m_organism->GetOrgInterface().HasOpinion(m_organism)) return false; in Inst_IncPredTolerance()
5817 if (!m_organism->GetOrgInterface().HasOpinion(m_organism)) return false; in Inst_DecPredTolerance()
5849 if(m_organism->GetOrgInterface().HasOpinion(m_organism)) { in Inst_GetPredTolerance()
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H A DcHardwareBase.cc68 assert(m_organism != NULL); in cHardwareBase()
74 m_organism->HardwareReset(ctx); in Reset()
203 if (!m_organism->GetOrgInterface().HasOpinion(m_organism)) { in Divide_CheckViable()
205m_organism->GetOrgInterface().SetOpinion(m_world->GetConfig().DEFAULT_GROUP.Get(), m_organism); in Divide_CheckViable()
343 m_organism->GetOrgInterface().DoHGTMutation(ctx, m_organism->OffspringGenome()); in Divide_DoMutations()
859 phenotype.CopyTrue() = ( m_organism->OffspringGenome() == m_organism->GetGenome() ); in Divide_TestFitnessMeasures()
953 m_organism->OffspringGenome() = m_organism->GetGenome(); in Divide_TestFitnessMeasures()
971 phenotype.CopyTrue() = (m_organism->OffspringGenome() == m_organism->GetGenome()); in Divide_TestFitnessMeasures1()
1067 m_organism->OffspringGenome() = m_organism->GetGenome(); in Divide_TestFitnessMeasures1()
1215 return m_organism->GetInputBuf(); in GetInputBuf()
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H A DcHardwareGX.cc504 m_organism->Die(ctx); in SingleProcess()
509 m_organism->Die(ctx); in SingleProcess()
1938 m_organism->GetPhenotype().SetLinesCopied(m_organism->GetGenome().GetSize()); in Inst_Repro()
1996 m_organism->Die(ctx); in Inst_Die()
2368 m_organism->Rotate(1); in Inst_DonateEditDist()
2437 m_organism->Rotate(1); in Inst_DonateGreenBeardGene()
2509 m_organism->Rotate(1); in Inst_DonateTrueGreenBeard()
2760 m_organism->Rotate(-1); in Inst_RotateL()
2773 m_organism->Rotate(-1); in Inst_RotateL()
2788 m_organism->Rotate(1); in Inst_RotateR()
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H A DcHardwareTransSMT.cc171 m_organism->ClearParasites(); in internalReset()
209 m_organism->SetRunning(true); in SingleProcess()
294 m_organism->Die(ctx); in SingleProcess()
297 m_organism->SetRunning(false); in SingleProcess()
341 m_organism->SetRunning(true); in ProcessBonusInst()
668 m_organism->GetPhenotype().SetLastTaskCount(m_organism->GetPhenotype().GetCurTaskCount()); in InjectParasite()
1209 m_organism->GetPhenotype().ResetMerit(m_organism->GetGenome().GetSequence()); in Divide_Main()
1590 m_organism->DoInput(value_in); in Inst_IO()
1669 m_organism->Die(ctx); in Inst_Apoptosis()
1722 m_organism->Rotate(1); in Inst_RotateLeft()
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H A DcHardwareSMT.cc166 m_organism->ClearParasites(); in internalReset()
200 m_organism->SetRunning(true); in SingleProcess()
266 m_organism->Die(ctx); in SingleProcess()
269 m_organism->SetRunning(false); in SingleProcess()
313 m_organism->SetRunning(true); in ProcessBonusInst()
420 if (m_organism->HasOpinion()) fp << m_organism->GetOpinion().first << " "; in PrintMiniTraceStatus()
423 fp << m_organism->GetCellID() << " "; in PrintMiniTraceStatus()
976 if(m_organism->GetDivMutProb() > 0){ in Inject_DoMutations()
1389 if (m_organism->TestCopyMut(ctx)) { in Inst_InstRead()
1584 m_organism->DoInput(value_in); in Inst_IO()
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H A DcHardwareBase.h62 cOrganism* m_organism; // Organism using this hardware. variable
128 cOrganism* GetOrganism() { return m_organism; } in GetOrganism()
H A DcHardwareGX.h366 virtual cBioUnit* ThreadGetOwner() { return m_organism; } in ThreadGetOwner()
H A DcHardwareExperimental.h293 cBioUnit* ThreadGetOwner() { return m_organism; } in ThreadGetOwner()
H A DcHardwareCPU.h294 cBioUnit* ThreadGetOwner() { return m_organism; } in ThreadGetOwner()
/dports/biology/avida/avida-2.12.4-src/avida-core/source/main/
H A DcPopulationCell.cc41 , m_organism(in_cell.m_organism) in cPopulationCell()
71 m_organism = in_cell.m_organism; in operator =()
264 assert(m_organism == NULL); in InsertOrganism()
267 m_organism = new_org; in InsertOrganism()
273 m_organism->GetOrgInterface().SetCellID(m_cell_id); in InsertOrganism()
274 m_organism->GetOrgInterface().SetDemeID(m_deme_id); in InsertOrganism()
286 cPhenotype& phenotype = m_organism->GetPhenotype(); in InsertOrganism()
298 cOrganism * out_organism = m_organism; in RemoveOrganism()
303 m_organism = NULL; in RemoveOrganism()
563 if (m_organism != NULL) { in SetCellData()
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H A DcOrgSensor.cc32 : m_world(world), m_organism(in_organism) in cOrgSensor()
56 int forage = m_organism->GetForageTarget(); in SetLooking()
130 if (id_sought < -1 || id_sought == m_organism->GetID()) { in SetLooking()
200 int searching_org_cell = m_organism->GetOrgInterface().GetCellID(); in FindOrg()
203 searching_org_cell = m_organism->GetOrgInterface().GetAVCellID(); in FindOrg()
314 m_organism->GetOrgInterface().TriggerDoUpdates(ctx); in WalkCells()
884 m_organism->GetOrgInterface().GetAVFacing(); in ReturnRelativeFacing()
904 m_organism->SetPotentialDisplay(display_data); in SetPotentialDisplayData()
917 int easterly = m_organism->GetEasterly(); in FindDirFromHome()
918 int northerly = m_organism->GetNortherly(); in FindDirFromHome()
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H A DcTaskContext.h48 cOrganism* m_organism;
72 : m_organism(organism) in m_organism() function
88 inline cOrganism* GetOrganism() { return m_organism; } in GetOrganism()
H A DcPopulationCell.h60 cOrganism* m_organism; // The occupent of this cell. variable
97 …cPopulationCell() : m_world(NULL), m_organism(NULL), m_hardware(NULL), m_mut_rates(NULL), m_migran… in cPopulationCell()
112 inline cOrganism* GetOrganism() const { return m_organism; } in GetOrganism()
151 inline bool IsOccupied() const { return m_organism != NULL; } in IsOccupied()
H A DcOrgSensor.h46 cOrganism* m_organism; // Organism using this sensor variable