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Searched refs:maf_level (Results 1 – 5 of 5) sorted by relevance

/dports/biology/gemma/GEMMA-0.98.3/src/
H A Dgemma_io.h64 vector<int> &indicator_snp, const double &maf_level,
73 const double &maf_level, const double &miss_level,
H A Dparam.cpp97 maf_level(0.01), hwe_level(0), r2_level(0.9999), l_min(1e-5), l_max(1e5), in PARAM()
283 snpInfo, maf_level, miss_level, hwe_level, r2_level, in ReadFiles()
317 maf_level, miss_level, hwe_level, r2_level, mapRS2chr, in ReadFiles()
371 snpInfo, maf_level, miss_level, hwe_level, r2_level, in ReadFiles()
423 maf_level, miss_level, hwe_level, r2_level, mapRS2chr, in ReadFiles()
530 if (maf_level > 0.5) { in CheckParam()
532 << "current value = " << maf_level << endl; in CheckParam()
H A Dgemma_io.cpp637 vector<int> &indicator_snp, const double &maf_level, in ReadFile_geno() argument
800 if ((maf < maf_level || maf > (1.0 - maf_level)) && maf_level != -1) { in ReadFile_geno()
812 if (hwe_level != 0 && maf_level != -1) { in ReadFile_geno()
862 const double &maf_level, const double &miss_level, in ReadFile_bed() argument
995 if ((maf < maf_level || maf > (1.0 - maf_level)) && maf_level != -1) { in ReadFile_bed()
1005 if (hwe_level != 0 && maf_level != -1) { in ReadFile_bed()
H A Dparam.h164 double maf_level; variable
H A Dgemma.cpp1096 if (cPar.maf_level != -1) { in Assign()
1097 cPar.maf_level = atof(str.c_str()); in Assign()
1116 cPar.maf_level = -1; in Assign()