Searched refs:maf_level (Results 1 – 5 of 5) sorted by relevance
/dports/biology/gemma/GEMMA-0.98.3/src/ |
H A D | gemma_io.h | 64 vector<int> &indicator_snp, const double &maf_level, 73 const double &maf_level, const double &miss_level,
|
H A D | param.cpp | 97 maf_level(0.01), hwe_level(0), r2_level(0.9999), l_min(1e-5), l_max(1e5), in PARAM() 283 snpInfo, maf_level, miss_level, hwe_level, r2_level, in ReadFiles() 317 maf_level, miss_level, hwe_level, r2_level, mapRS2chr, in ReadFiles() 371 snpInfo, maf_level, miss_level, hwe_level, r2_level, in ReadFiles() 423 maf_level, miss_level, hwe_level, r2_level, mapRS2chr, in ReadFiles() 530 if (maf_level > 0.5) { in CheckParam() 532 << "current value = " << maf_level << endl; in CheckParam()
|
H A D | gemma_io.cpp | 637 vector<int> &indicator_snp, const double &maf_level, in ReadFile_geno() argument 800 if ((maf < maf_level || maf > (1.0 - maf_level)) && maf_level != -1) { in ReadFile_geno() 812 if (hwe_level != 0 && maf_level != -1) { in ReadFile_geno() 862 const double &maf_level, const double &miss_level, in ReadFile_bed() argument 995 if ((maf < maf_level || maf > (1.0 - maf_level)) && maf_level != -1) { in ReadFile_bed() 1005 if (hwe_level != 0 && maf_level != -1) { in ReadFile_bed()
|
H A D | param.h | 164 double maf_level; variable
|
H A D | gemma.cpp | 1096 if (cPar.maf_level != -1) { in Assign() 1097 cPar.maf_level = atof(str.c_str()); in Assign() 1116 cPar.maf_level = -1; in Assign()
|