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Searched refs:mapRS2cat (Results 1 – 6 of 6) sorted by relevance

/dports/biology/gemma/GEMMA-0.98.3/src/
H A Dgemma_io.h122 bool ReadFile_cat(const string &file_cat, map<string, size_t> &mapRS2cat,
124 bool ReadFile_mcat(const string &file_mcat, map<string, size_t> &mapRS2cat,
137 const map<string, size_t> &mapRS2cat,
144 const map<string, size_t> &mapRS2cat,
152 const map<string, size_t> &mapRS2cat,
161 const map<string, size_t> &mapRS2cat,
H A Dparam.cpp2234 (mapRS2cat.size() == 0 || mapRS2cat.count(rs) != 0)) { in ObtainWeight()
2237 if (mapRS2cat.size() == 0) { in ObtainWeight()
2262 (mapRS2cat.size() == 0 || mapRS2cat.count(rs) != 0)) { in ObtainWeight()
2265 if (mapRS2cat.size() == 0) { in ObtainWeight()
2286 if (mapRS2cat.size() == 0) { in ObtainWeight()
2325 if (mapRS2cat.size() == 0) { in UpdateWeight()
2330 wcount[mapRS2cat[it->first]]++; in UpdateWeight()
2340 if (mapRS2cat.size() == 0) { in UpdateWeight()
2343 it->second /= wsum[mapRS2cat[it->first]]; in UpdateWeight()
2376 vec_cat.push_back(mapRS2cat.at(rs)); in UpdateSNPnZ()
[all …]
H A Dvc.cpp944 (mapRS2cat.size() == 0 || mapRS2cat.count(rs) != 0)) { in ReadFile_beta()
1115 if ((mapRS2cat.size() == 0 || mapRS2cat.count(rs1) != 0) && in ReadFile_cor()
1122 mat_S[mapRS2cat.at(rs1)][mapRS2cat.at(rs1)] += in ReadFile_cor()
1124 mat_Svar[mapRS2cat.at(rs1)][mapRS2cat.at(rs1)] += in ReadFile_cor()
1127 mat3d_Sbin[mapRS2cat.at(rs1)][mapRS2cat.at(rs1)][0] += in ReadFile_cor()
1151 if ((mapRS2cat.size() == 0 || mapRS2cat.count(rs2) != 0) && in ReadFile_cor()
1176 if (mapRS2cat.at(rs1) == mapRS2cat.at(rs2)) { in ReadFile_cor()
1179 mat_Svar[mapRS2cat.at(rs1)][mapRS2cat.at(rs2)] += in ReadFile_cor()
1182 mat3d_Sbin[mapRS2cat.at(rs1)][mapRS2cat.at(rs2)][bin] += in ReadFile_cor()
1186 mat_S[mapRS2cat.at(rs1)][mapRS2cat.at(rs2)] += d1 * d2; in ReadFile_cor()
[all …]
H A Dgemma_io.cpp2620 mapRS2cat.clear(); in ReadFile_cat()
2687 mapRS2cat[rs] = i_cat; in ReadFile_cat()
2706 mapRS2cat.clear(); in ReadFile_mcat()
2853 if (n_vc == 1 || mapRS2cat.size() == 0) { in BimbamKinUncentered()
2863 } else if (mapRS2cat.count(rs) != 0) { in BimbamKinUncentered()
2864 i_vc = mapRS2cat.at(rs); in BimbamKinUncentered()
3089 } else if (mapRS2cat.count(rs) != 0) { in PlinkKin()
3090 i_vc = mapRS2cat.at(rs); in PlinkKin()
3509 (mapRS2cat.size() == 0 || mapRS2cat.count(rs) != 0) && zsquare != 0) { in ReadFile_beta()
3510 if (mapRS2cat.size() != 0) { in ReadFile_beta()
[all …]
H A Dparam.h318 map<string, size_t> mapRS2cat; // Map rs# to category number. variable
H A Dgemma.cpp2013 ReadFile_beta(cPar.file_beta, cPar.mapRS2cat, mapRS2weight, vec_cat, vec_ni, in BatchRun()
2145 ReadFile_beta(cPar.file_beta, cPar.mapRS2cat, mapRS2wK, vec_cat, vec_ni, in BatchRun()
2183 ReadFile_beta(cPar.file_beta, cPar.mapRS2cat, mapRS2wA, vec_cat, vec_ni, in BatchRun()
2447 vec_size[cPar.mapRS2cat[it->first]]++; in BatchRun()