Searched refs:mapRS2cat (Results 1 – 6 of 6) sorted by relevance
/dports/biology/gemma/GEMMA-0.98.3/src/ |
H A D | gemma_io.h | 122 bool ReadFile_cat(const string &file_cat, map<string, size_t> &mapRS2cat, 124 bool ReadFile_mcat(const string &file_mcat, map<string, size_t> &mapRS2cat, 137 const map<string, size_t> &mapRS2cat, 144 const map<string, size_t> &mapRS2cat, 152 const map<string, size_t> &mapRS2cat, 161 const map<string, size_t> &mapRS2cat,
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H A D | param.cpp | 2234 (mapRS2cat.size() == 0 || mapRS2cat.count(rs) != 0)) { in ObtainWeight() 2237 if (mapRS2cat.size() == 0) { in ObtainWeight() 2262 (mapRS2cat.size() == 0 || mapRS2cat.count(rs) != 0)) { in ObtainWeight() 2265 if (mapRS2cat.size() == 0) { in ObtainWeight() 2286 if (mapRS2cat.size() == 0) { in ObtainWeight() 2325 if (mapRS2cat.size() == 0) { in UpdateWeight() 2330 wcount[mapRS2cat[it->first]]++; in UpdateWeight() 2340 if (mapRS2cat.size() == 0) { in UpdateWeight() 2343 it->second /= wsum[mapRS2cat[it->first]]; in UpdateWeight() 2376 vec_cat.push_back(mapRS2cat.at(rs)); in UpdateSNPnZ() [all …]
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H A D | vc.cpp | 944 (mapRS2cat.size() == 0 || mapRS2cat.count(rs) != 0)) { in ReadFile_beta() 1115 if ((mapRS2cat.size() == 0 || mapRS2cat.count(rs1) != 0) && in ReadFile_cor() 1122 mat_S[mapRS2cat.at(rs1)][mapRS2cat.at(rs1)] += in ReadFile_cor() 1124 mat_Svar[mapRS2cat.at(rs1)][mapRS2cat.at(rs1)] += in ReadFile_cor() 1127 mat3d_Sbin[mapRS2cat.at(rs1)][mapRS2cat.at(rs1)][0] += in ReadFile_cor() 1151 if ((mapRS2cat.size() == 0 || mapRS2cat.count(rs2) != 0) && in ReadFile_cor() 1176 if (mapRS2cat.at(rs1) == mapRS2cat.at(rs2)) { in ReadFile_cor() 1179 mat_Svar[mapRS2cat.at(rs1)][mapRS2cat.at(rs2)] += in ReadFile_cor() 1182 mat3d_Sbin[mapRS2cat.at(rs1)][mapRS2cat.at(rs2)][bin] += in ReadFile_cor() 1186 mat_S[mapRS2cat.at(rs1)][mapRS2cat.at(rs2)] += d1 * d2; in ReadFile_cor() [all …]
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H A D | gemma_io.cpp | 2620 mapRS2cat.clear(); in ReadFile_cat() 2687 mapRS2cat[rs] = i_cat; in ReadFile_cat() 2706 mapRS2cat.clear(); in ReadFile_mcat() 2853 if (n_vc == 1 || mapRS2cat.size() == 0) { in BimbamKinUncentered() 2863 } else if (mapRS2cat.count(rs) != 0) { in BimbamKinUncentered() 2864 i_vc = mapRS2cat.at(rs); in BimbamKinUncentered() 3089 } else if (mapRS2cat.count(rs) != 0) { in PlinkKin() 3090 i_vc = mapRS2cat.at(rs); in PlinkKin() 3509 (mapRS2cat.size() == 0 || mapRS2cat.count(rs) != 0) && zsquare != 0) { in ReadFile_beta() 3510 if (mapRS2cat.size() != 0) { in ReadFile_beta() [all …]
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H A D | param.h | 318 map<string, size_t> mapRS2cat; // Map rs# to category number. variable
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H A D | gemma.cpp | 2013 ReadFile_beta(cPar.file_beta, cPar.mapRS2cat, mapRS2weight, vec_cat, vec_ni, in BatchRun() 2145 ReadFile_beta(cPar.file_beta, cPar.mapRS2cat, mapRS2wK, vec_cat, vec_ni, in BatchRun() 2183 ReadFile_beta(cPar.file_beta, cPar.mapRS2cat, mapRS2wA, vec_cat, vec_ni, in BatchRun() 2447 vec_size[cPar.mapRS2cat[it->first]]++; in BatchRun()
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