Searched refs:masterSeqIndex (Results 1 – 5 of 5) sorted by relevance
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/structure/bma_refine/ |
H A D | BMAUtils.cpp | 298 unsigned int seqIndex, masterSeqIndex, alphabetSize; in PrintPSSMForRow() local 361 …Pssm && BMAUtils::GetCharacterAndIndexForColumn(bma, column, 0, &masterResidue, &masterSeqIndex)) { in PrintPSSMForRow() 363 … thisScore = GetPSSMScoreOfCharWithAverageOfBZ(bma.GetPSSM(), masterSeqIndex, residue); in PrintPSSMForRow() 365 oss << "; master/slave sequence pos: " << setw(4) << masterSeqIndex+1 << "/"; in PrintPSSMForRow() 378 oss << " " << k+1 << " " << bma.GetPSSM()->matrix[masterSeqIndex][k]; in PrintPSSMForRow() 447 unsigned int alphabetSize, blockIndex, seqIndex, masterSeqIndex, nRows, row; in PrintPSSMForColumn() local 484 masterSeqIndex = 0; in PrintPSSMForColumn() 492 if (row == 0) masterSeqIndex = seqIndex; in PrintPSSMForColumn() 497 thisScore = GetPSSMScoreOfCharWithAverageOfBZ(bma.GetPSSM(), masterSeqIndex, residue); in PrintPSSMForColumn() 509 << setw(4) << masterSeqIndex + 1<< " " << setw(4) << seqIndex + 1 in PrintPSSMForColumn() [all …]
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/structure/struct_util/ |
H A D | su_block_multiple_alignment.hpp | 168 unsigned int GetAlignedSlaveIndex(unsigned int masterSeqIndex, unsigned int slaveRow) const;
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/cn3d/ |
H A D | block_multiple_alignment.hpp | 178 int GetAlignedDependentIndex(unsigned int masterSeqIndex, unsigned int dependentRow) const;
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H A D | block_multiple_alignment.cpp | 571 int BlockMultipleAlignment::GetAlignedDependentIndex(unsigned int masterSeqIndex, unsigned int depe… in GetAlignedDependentIndex() argument 574 *aBlock = dynamic_cast<const UngappedAlignedBlock*>(GetBlock(0, masterSeqIndex)); in GetAlignedDependentIndex() 580 return (dependentRange->from + masterSeqIndex - masterRange->from); in GetAlignedDependentIndex()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/structure/struct_util/ |
H A D | su_block_multiple_alignment.cpp | 381 unsigned int BlockMultipleAlignment::GetAlignedSlaveIndex(unsigned int masterSeqIndex, unsigned int… in GetAlignedSlaveIndex() argument 384 *aBlock = dynamic_cast<const UngappedAlignedBlock*>(GetBlock(0, masterSeqIndex)); in GetAlignedSlaveIndex() 391 return (slaveRange->from + masterSeqIndex - masterRange->from); in GetAlignedSlaveIndex()
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