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Searched refs:masterSeqIndex (Results 1 – 5 of 5) sorted by relevance

/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/structure/bma_refine/
H A DBMAUtils.cpp298 unsigned int seqIndex, masterSeqIndex, alphabetSize; in PrintPSSMForRow() local
361 …Pssm && BMAUtils::GetCharacterAndIndexForColumn(bma, column, 0, &masterResidue, &masterSeqIndex)) { in PrintPSSMForRow()
363 … thisScore = GetPSSMScoreOfCharWithAverageOfBZ(bma.GetPSSM(), masterSeqIndex, residue); in PrintPSSMForRow()
365 oss << "; master/slave sequence pos: " << setw(4) << masterSeqIndex+1 << "/"; in PrintPSSMForRow()
378 oss << " " << k+1 << " " << bma.GetPSSM()->matrix[masterSeqIndex][k]; in PrintPSSMForRow()
447 unsigned int alphabetSize, blockIndex, seqIndex, masterSeqIndex, nRows, row; in PrintPSSMForColumn() local
484 masterSeqIndex = 0; in PrintPSSMForColumn()
492 if (row == 0) masterSeqIndex = seqIndex; in PrintPSSMForColumn()
497 thisScore = GetPSSMScoreOfCharWithAverageOfBZ(bma.GetPSSM(), masterSeqIndex, residue); in PrintPSSMForColumn()
509 << setw(4) << masterSeqIndex + 1<< " " << setw(4) << seqIndex + 1 in PrintPSSMForColumn()
[all …]
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/structure/struct_util/
H A Dsu_block_multiple_alignment.hpp168 unsigned int GetAlignedSlaveIndex(unsigned int masterSeqIndex, unsigned int slaveRow) const;
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/cn3d/
H A Dblock_multiple_alignment.hpp178 int GetAlignedDependentIndex(unsigned int masterSeqIndex, unsigned int dependentRow) const;
H A Dblock_multiple_alignment.cpp571 int BlockMultipleAlignment::GetAlignedDependentIndex(unsigned int masterSeqIndex, unsigned int depe… in GetAlignedDependentIndex() argument
574 *aBlock = dynamic_cast<const UngappedAlignedBlock*>(GetBlock(0, masterSeqIndex)); in GetAlignedDependentIndex()
580 return (dependentRange->from + masterSeqIndex - masterRange->from); in GetAlignedDependentIndex()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/structure/struct_util/
H A Dsu_block_multiple_alignment.cpp381 unsigned int BlockMultipleAlignment::GetAlignedSlaveIndex(unsigned int masterSeqIndex, unsigned int… in GetAlignedSlaveIndex() argument
384 *aBlock = dynamic_cast<const UngappedAlignedBlock*>(GetBlock(0, masterSeqIndex)); in GetAlignedSlaveIndex()
391 return (slaveRange->from + masterSeqIndex - masterRange->from); in GetAlignedSlaveIndex()