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/dports/biology/gemma/GEMMA-0.98.3/src/
H A Dvc.cpp1026 vector<vector<double>> mat_S, mat_Svar, mat_tmp; in ReadFile_cor() local
1036 mat_Svar.push_back(vec_qvar); in ReadFile_cor()
1124 mat_Svar[mapRS2cat.at(rs1)][mapRS2cat.at(rs1)] += in ReadFile_cor()
1132 mat_Svar[0][0] += in ReadFile_cor()
1179 mat_Svar[mapRS2cat.at(rs1)][mapRS2cat.at(rs2)] += in ReadFile_cor()
1187 mat_Svar[mapRS2cat.at(rs1)][mapRS2cat.at(rs2)] += in ReadFile_cor()
1197 mat_Svar[0][0] += 2 * d2 * d2 / ((double)n12 * (double)n12); in ReadFile_cor()
1288 gsl_matrix_set(Svar_mat, i, j, 2.0 * mat_Svar[i][i] * ns_test * in ReadFile_cor()
1292 gsl_matrix_set(Svar_mat, i, j, 2.0 * (mat_Svar[i][j] + mat_Svar[j][i]) * in ReadFile_cor()