Searched refs:matchingBpAtEnd (Results 1 – 3 of 3) sorted by relevance
667 int matchingBpAtEnd = 0; in main() local712 matchingBpAtEnd = i; in main()717 int altMismatchLength = a->seq.size() - matchingBpAtEnd - matchingBpAtStart; in main()718 … int refMismatchLength = (var.ref.size() + currentWindow) - matchingBpAtEnd - matchingBpAtStart; in main()
641 int matchingBpAtEnd = 0; in main() local686 matchingBpAtEnd = i; in main()691 int altMismatchLength = a->seq.size() - matchingBpAtEnd - matchingBpAtStart; in main()692 … int refMismatchLength = (var.ref.size() + currentWindow) - matchingBpAtEnd - matchingBpAtStart; in main()