Searched refs:matePairTuple (Results 1 – 4 of 4) sorted by relevance
/dports/biology/seqan1/seqan-1.3.1/apps/insegt/ |
H A D | fusion.h | 101 TIds matePairTuple; in buildTupleCountStore_Fusion() local 242 matePairTuple = getValue(itTuple); in buildTupleCountStore_Fusion() 244 appendValue(matePairTuple, INVALID_ANNO_ID, Generous()); in buildTupleCountStore_Fusion() 250 append(matePairTuple, getValue(itSecTuple), Generous()); in buildTupleCountStore_Fusion() 268 … if (searchValue(pos, matePairTuple, getValue(tupleCountStore, firstAnnoId1).matePairConnections)) in buildTupleCountStore_Fusion() 275 … assignValue(value(tupleCountStore, firstAnnoId1).matePairConnections, pos, matePairTuple); in buildTupleCountStore_Fusion() 280 … appendValue(value(tupleCountStore, firstAnnoId1).matePairConnections, matePairTuple, Generous()); in buildTupleCountStore_Fusion() 302 matePairTuple = getValue(itTuple); in buildTupleCountStore_Fusion() 304 appendValue(matePairTuple, INVALID_ANNO_ID, Generous()); in buildTupleCountStore_Fusion() 310 append(matePairTuple, getValue(itSecTuple), Generous()); in buildTupleCountStore_Fusion() [all …]
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H A D | overlap_module.h | 259 TIds matePairTuple; in buildTupleCountStore() local 363 matePairTuple = getValue(itTuple); in buildTupleCountStore() 365 appendValue(matePairTuple, INVALID_ANNO_ID, Generous()); in buildTupleCountStore() 371 append(matePairTuple, getValue(itSecTuple), Generous()); in buildTupleCountStore() 389 … if (searchValue(pos, matePairTuple, getValue(tupleCountStore, firstAnnoId1).matePairConnections)) in buildTupleCountStore() 396 … assignValue(value(tupleCountStore, firstAnnoId1).matePairConnections, pos, matePairTuple); in buildTupleCountStore() 401 … appendValue(value(tupleCountStore, firstAnnoId1).matePairConnections, matePairTuple, Generous()); in buildTupleCountStore()
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/insegt/ |
H A D | fusion.h | 101 TIds matePairTuple; in buildTupleCountStore_Fusion() local 242 matePairTuple = *itTuple; in buildTupleCountStore_Fusion() 244 appendValue(matePairTuple, INVALID_ANNO_ID, Generous()); in buildTupleCountStore_Fusion() 250 append(matePairTuple, *itSecTuple, Generous()); in buildTupleCountStore_Fusion() 268 … if (searchValue(pos, matePairTuple, getValue(tupleCountStore, firstAnnoId1).matePairConnections)) in buildTupleCountStore_Fusion() 275 … assignValue(value(tupleCountStore, firstAnnoId1).matePairConnections, pos, matePairTuple); in buildTupleCountStore_Fusion() 280 … appendValue(value(tupleCountStore, firstAnnoId1).matePairConnections, matePairTuple, Generous()); in buildTupleCountStore_Fusion() 302 matePairTuple = *itTuple; in buildTupleCountStore_Fusion() 304 appendValue(matePairTuple, INVALID_ANNO_ID, Generous()); in buildTupleCountStore_Fusion() 310 append(matePairTuple, *itSecTuple, Generous()); in buildTupleCountStore_Fusion() [all …]
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H A D | overlap_module.h | 284 TIds matePairTuple; in buildTupleCountStore() local 388 matePairTuple = *itTuple; in buildTupleCountStore() 390 appendValue(matePairTuple, INVALID_ANNO_ID, Generous()); in buildTupleCountStore() 396 append(matePairTuple, *itSecTuple, Generous()); in buildTupleCountStore() 414 … if (searchValue(pos, matePairTuple, getValue(tupleCountStore, firstAnnoId1).matePairConnections)) in buildTupleCountStore() 421 … assignValue(value(tupleCountStore, firstAnnoId1).matePairConnections, pos, matePairTuple); in buildTupleCountStore() 426 … appendValue(value(tupleCountStore, firstAnnoId1).matePairConnections, matePairTuple, Generous()); in buildTupleCountStore()
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