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Searched refs:matePairTuple (Results 1 – 4 of 4) sorted by relevance

/dports/biology/seqan1/seqan-1.3.1/apps/insegt/
H A Dfusion.h101 TIds matePairTuple; in buildTupleCountStore_Fusion() local
242 matePairTuple = getValue(itTuple); in buildTupleCountStore_Fusion()
244 appendValue(matePairTuple, INVALID_ANNO_ID, Generous()); in buildTupleCountStore_Fusion()
250 append(matePairTuple, getValue(itSecTuple), Generous()); in buildTupleCountStore_Fusion()
268 … if (searchValue(pos, matePairTuple, getValue(tupleCountStore, firstAnnoId1).matePairConnections)) in buildTupleCountStore_Fusion()
275 … assignValue(value(tupleCountStore, firstAnnoId1).matePairConnections, pos, matePairTuple); in buildTupleCountStore_Fusion()
280 … appendValue(value(tupleCountStore, firstAnnoId1).matePairConnections, matePairTuple, Generous()); in buildTupleCountStore_Fusion()
302 matePairTuple = getValue(itTuple); in buildTupleCountStore_Fusion()
304 appendValue(matePairTuple, INVALID_ANNO_ID, Generous()); in buildTupleCountStore_Fusion()
310 append(matePairTuple, getValue(itSecTuple), Generous()); in buildTupleCountStore_Fusion()
[all …]
H A Doverlap_module.h259 TIds matePairTuple; in buildTupleCountStore() local
363 matePairTuple = getValue(itTuple); in buildTupleCountStore()
365 appendValue(matePairTuple, INVALID_ANNO_ID, Generous()); in buildTupleCountStore()
371 append(matePairTuple, getValue(itSecTuple), Generous()); in buildTupleCountStore()
389 … if (searchValue(pos, matePairTuple, getValue(tupleCountStore, firstAnnoId1).matePairConnections)) in buildTupleCountStore()
396 … assignValue(value(tupleCountStore, firstAnnoId1).matePairConnections, pos, matePairTuple); in buildTupleCountStore()
401 … appendValue(value(tupleCountStore, firstAnnoId1).matePairConnections, matePairTuple, Generous()); in buildTupleCountStore()
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/insegt/
H A Dfusion.h101 TIds matePairTuple; in buildTupleCountStore_Fusion() local
242 matePairTuple = *itTuple; in buildTupleCountStore_Fusion()
244 appendValue(matePairTuple, INVALID_ANNO_ID, Generous()); in buildTupleCountStore_Fusion()
250 append(matePairTuple, *itSecTuple, Generous()); in buildTupleCountStore_Fusion()
268 … if (searchValue(pos, matePairTuple, getValue(tupleCountStore, firstAnnoId1).matePairConnections)) in buildTupleCountStore_Fusion()
275 … assignValue(value(tupleCountStore, firstAnnoId1).matePairConnections, pos, matePairTuple); in buildTupleCountStore_Fusion()
280 … appendValue(value(tupleCountStore, firstAnnoId1).matePairConnections, matePairTuple, Generous()); in buildTupleCountStore_Fusion()
302 matePairTuple = *itTuple; in buildTupleCountStore_Fusion()
304 appendValue(matePairTuple, INVALID_ANNO_ID, Generous()); in buildTupleCountStore_Fusion()
310 append(matePairTuple, *itSecTuple, Generous()); in buildTupleCountStore_Fusion()
[all …]
H A Doverlap_module.h284 TIds matePairTuple; in buildTupleCountStore() local
388 matePairTuple = *itTuple; in buildTupleCountStore()
390 appendValue(matePairTuple, INVALID_ANNO_ID, Generous()); in buildTupleCountStore()
396 append(matePairTuple, *itSecTuple, Generous()); in buildTupleCountStore()
414 … if (searchValue(pos, matePairTuple, getValue(tupleCountStore, firstAnnoId1).matePairConnections)) in buildTupleCountStore()
421 … assignValue(value(tupleCountStore, firstAnnoId1).matePairConnections, pos, matePairTuple); in buildTupleCountStore()
426 … appendValue(value(tupleCountStore, firstAnnoId1).matePairConnections, matePairTuple, Generous()); in buildTupleCountStore()