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/dports/biology/emboss/EMBOSS-6.6.0/jemboss/org/emboss/jemboss/editor/
H A DMatrix.java51 private String matrixFileName = null; field in Matrix
66 this.matrixFileName = matrixFile.getName(); in Matrix()
78 this.matrixFileName = matrixFileName; in Matrix()
106 if(matrixHash.containsKey(matrixFileName)) in Matrix()
119 "Failed to read "+matrixFileName+ in Matrix()
127 public void changeMatrix(String matrixFileName){ in changeMatrix() argument
138 this.matrixFileName = matrixFileName; in changeMatrix()
165 this.matrixFileName = matrixFileName; in changeMatrix()
209 int index = matrixFileName.lastIndexOf("/"); in getCurrentMatrixName()
211 return matrixFileName.substring(index+1); in getCurrentMatrixName()
[all …]
/dports/math/spooles-mpich/spooles.2.2/misc/drivers/
H A Ddo_allInOne22 set matrixFileName = complex.sym.mtx.input
23 set matrixFileName = complex.herm.mtx.input
24 set matrixFileName = complex.nonsym.mtx.input
25 set matrixFileName = matrix.input
26 set matrixFileName = haggar.matrix.input
42 $matrixFileName $rhsFileName $seed
H A Ddo_QRallInOne11 set matrixFileName = qr.matrix.input
17 QRallInOne $msglvl $msgFile $type $matrixFileName $rhsFileName $seed
H A Ddo_patchAndGo23 set matrixFileName = singularMatrix.input
31 $matrixFileName $rhsFileName $seed
/dports/math/spooles-mpich/spooles.2.2_SHARED/misc/drivers/
H A Ddo_allInOne22 set matrixFileName = complex.sym.mtx.input
23 set matrixFileName = complex.herm.mtx.input
24 set matrixFileName = complex.nonsym.mtx.input
25 set matrixFileName = matrix.input
26 set matrixFileName = haggar.matrix.input
42 $matrixFileName $rhsFileName $seed
H A Ddo_QRallInOne11 set matrixFileName = qr.matrix.input
17 QRallInOne $msglvl $msgFile $type $matrixFileName $rhsFileName $seed
H A Ddo_patchAndGo23 set matrixFileName = singularMatrix.input
31 $matrixFileName $rhsFileName $seed
/dports/math/spooles/spooles.2.2_SHARED/misc/drivers/
H A Ddo_allInOne22 set matrixFileName = complex.sym.mtx.input
23 set matrixFileName = complex.herm.mtx.input
24 set matrixFileName = complex.nonsym.mtx.input
25 set matrixFileName = matrix.input
26 set matrixFileName = haggar.matrix.input
42 $matrixFileName $rhsFileName $seed
H A Ddo_QRallInOne11 set matrixFileName = qr.matrix.input
17 QRallInOne $msglvl $msgFile $type $matrixFileName $rhsFileName $seed
H A Ddo_patchAndGo23 set matrixFileName = singularMatrix.input
31 $matrixFileName $rhsFileName $seed
/dports/math/spooles/spooles.2.2/misc/drivers/
H A Ddo_allInOne22 set matrixFileName = complex.sym.mtx.input
23 set matrixFileName = complex.herm.mtx.input
24 set matrixFileName = complex.nonsym.mtx.input
25 set matrixFileName = matrix.input
26 set matrixFileName = haggar.matrix.input
42 $matrixFileName $rhsFileName $seed
H A Ddo_QRallInOne11 set matrixFileName = qr.matrix.input
17 QRallInOne $msglvl $msgFile $type $matrixFileName $rhsFileName $seed
H A Ddo_patchAndGo23 set matrixFileName = singularMatrix.input
31 $matrixFileName $rhsFileName $seed
/dports/biology/star/STAR-2.7.9a/source/
H A DSoloFeature_outputResults.cpp70 string matrixFileName=outputPrefixMat; in outputResults() local
73 matrixFileName += velonames[iCol-1]; in outputResults()
79 … matrixFileName += "umiDedup-" + pSolo.umiDedup.typeNames[pSolo.umiDedup.types[iCol-1]] + ".mtx"; in outputResults()
82 matrixFileName += pSolo.outFileNames[3]; in outputResults()
84 ofstream &countMatrixStream=ofstrOpen(matrixFileName,ERROR_OUT, P); in outputResults()
119 … string matrixFileName=outputPrefixMat + "UniqueAndMult-" + pSolo.multiMap.typeNames[iMult]; in outputResults() local
121 … matrixFileName += "_umiDedup-" + pSolo.umiDedup.typeNames[pSolo.umiDedup.types[iDed]]; in outputResults()
123 matrixFileName += ".mtx"; in outputResults()
194 ofstream &countMatrixStream=ofstrOpen(matrixFileName, ERROR_OUT, P); in outputResults()
H A DSoloFeature_loadRawMatrix.cpp22 string matrixFileName=inputPrefix+pSolo.outFileNames[3]; in loadRawMatrix() local
23 …ream &matStream=ifstrOpen(matrixFileName, ERROR_OUT, "SOLUTION: check path and permission for the … in loadRawMatrix()
36 …tWithError("Exiting because of fatal INPUT FILE error: no counts detected in " + matrixFileName + \ in loadRawMatrix()
/dports/math/primme/primme-3.2/tests/COMMON/
H A Dcsr.c46 int readMatrixNative(const char* matrixFileName, CSRMatrix **matrix_, double *fnorm) { in readMatrixNative() argument
51 if (!strcmp("mtx", &matrixFileName[strlen(matrixFileName)-3])) { in readMatrixNative()
53 ret = readfullMTX(matrixFileName, &matrix->AElts, &matrix->JA, in readMatrixNative()
60 else if (matrixFileName[strlen(matrixFileName)-1] == 'U') { in readMatrixNative()
63 ret = readUpperMTX(matrixFileName, &matrix->AElts, &matrix->JA, in readMatrixNative()
/dports/math/py-primme/primme-3.2/tests/COMMON/
H A Dcsr.c46 int readMatrixNative(const char* matrixFileName, CSRMatrix **matrix_, double *fnorm) { in readMatrixNative() argument
51 if (!strcmp("mtx", &matrixFileName[strlen(matrixFileName)-3])) { in readMatrixNative()
53 ret = readfullMTX(matrixFileName, &matrix->AElts, &matrix->JA, in readMatrixNative()
60 else if (matrixFileName[strlen(matrixFileName)-1] == 'U') { in readMatrixNative()
63 ret = readUpperMTX(matrixFileName, &matrix->AElts, &matrix->JA, in readMatrixNative()
/dports/math/spooles-mpich/spooles.2.2/MT/drivers/
H A Ddo_allInOneMT22 set matrixFileName = matrix.input
31 $matrixFileName $rhsFileName $seed $nthread
H A Ddo_patchAndGoMT23 set matrixFileName = singularMatrix.input
33 $matrixFileName $rhsFileName $seed $nthread
/dports/math/spooles-mpich/spooles.2.2_SHARED/MT/drivers/
H A Ddo_allInOneMT22 set matrixFileName = matrix.input
31 $matrixFileName $rhsFileName $seed $nthread
H A Ddo_patchAndGoMT23 set matrixFileName = singularMatrix.input
33 $matrixFileName $rhsFileName $seed $nthread
/dports/math/spooles/spooles.2.2_SHARED/MT/drivers/
H A Ddo_allInOneMT22 set matrixFileName = matrix.input
31 $matrixFileName $rhsFileName $seed $nthread
H A Ddo_patchAndGoMT23 set matrixFileName = singularMatrix.input
33 $matrixFileName $rhsFileName $seed $nthread
/dports/math/spooles/spooles.2.2/MT/drivers/
H A Ddo_allInOneMT22 set matrixFileName = matrix.input
31 $matrixFileName $rhsFileName $seed $nthread
H A Ddo_patchAndGoMT23 set matrixFileName = singularMatrix.input
33 $matrixFileName $rhsFileName $seed $nthread

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