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Searched refs:maxEndPos (Results 1 – 16 of 16) sorted by relevance

/dports/biology/mmseqs2/MMseqs2-13-45111/src/alignment/
H A DDistanceCalculator.h184 int maxEndPos = 0; in computeSubstitutionStartEndDistance() local
196 maxEndPos = (isNewMaxScore) ? pos : maxEndPos; in computeSubstitutionStartEndDistance()
200 return LocalAlignment(maxStartPos, maxEndPos, maxScore); in computeSubstitutionStartEndDistance()
233 unsigned int maxEndPos = 0; variable
260 maxEndPos = pos;
266 for(unsigned int pos = maxStartPos; pos < maxEndPos; pos++){
271 return LocalAlignment(maxStartPos, maxEndPos, maxScore);
/dports/biology/seqan1/seqan-1.3.1/apps/razers/
H A Drazers_spliced.h1875 …TGPos maxEndPos = (*it).i2.gEnd + length(read)-2*options.minMatchLen + floor(options.errorRate*len… in mapSplicedReads() local
1876 if(maxEndPos > length(genome)) maxEndPos = length(genome); in mapSplicedReads()
1878 infix(genome, (*it).i2.gBegin, maxEndPos), in mapSplicedReads()
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/razers/
H A Drazers_spliced.h1877 …TGPos maxEndPos = (*it).i2.gEnd + length(read)-2*options.minMatchLen + floor(options.errorRate*len… in mapSplicedReads() local
1878 if(maxEndPos > length(genome)) maxEndPos = length(genome); in mapSplicedReads()
1880 infix(genome, (*it).i2.gBegin, maxEndPos), in mapSplicedReads()
/dports/java/openjdk8/jdk8u-jdk8u312-b07.1/jdk/src/share/classes/java/time/format/
H A DDateTimeFormatterBuilder.java2655 int maxEndPos = Math.min(pos + effMaxWidth, length); in parse() local
2656 while (pos < maxEndPos) { in parse()
2995 int maxEndPos = Math.min(position + effectiveMax, length); in parse() local
2998 while (pos < maxEndPos) { in parse()
/dports/java/openjdk8-jre/jdk8u-jdk8u312-b07.1/jdk/src/share/classes/java/time/format/
H A DDateTimeFormatterBuilder.java2655 int maxEndPos = Math.min(pos + effMaxWidth, length); in parse() local
2656 while (pos < maxEndPos) { in parse()
2995 int maxEndPos = Math.min(position + effectiveMax, length); in parse() local
2998 while (pos < maxEndPos) { in parse()
/dports/java/openjdk11/jdk11u-jdk-11.0.13-8-1/src/java.base/share/classes/java/time/format/
H A DDateTimeFormatterBuilder.java2806 int maxEndPos = Math.min(pos + effMaxWidth, length); in parse() local
2807 while (pos < maxEndPos) { in parse()
3194 int maxEndPos = Math.min(position + effectiveMax, length); in parse() local
3197 while (pos < maxEndPos) { in parse()
/dports/java/openjdk11-jre/jdk11u-jdk-11.0.13-8-1/src/java.base/share/classes/java/time/format/
H A DDateTimeFormatterBuilder.java2806 int maxEndPos = Math.min(pos + effMaxWidth, length); in parse() local
2807 while (pos < maxEndPos) { in parse()
3194 int maxEndPos = Math.min(position + effectiveMax, length); in parse() local
3197 while (pos < maxEndPos) { in parse()
/dports/java/openjdk13/jdk13u-jdk-13.0.10-1-1/src/java.base/share/classes/java/time/format/
H A DDateTimeFormatterBuilder.java2810 int maxEndPos = Math.min(pos + effMaxWidth, length); in parse() local
2811 while (pos < maxEndPos) { in parse()
3198 int maxEndPos = Math.min(position + effectiveMax, length); in parse() local
3201 while (pos < maxEndPos) { in parse()
/dports/java/openjdk12/openjdk-jdk12u-jdk-12.0.2-10-4/src/java.base/share/classes/java/time/format/
H A DDateTimeFormatterBuilder.java2810 int maxEndPos = Math.min(pos + effMaxWidth, length); in parse() local
2811 while (pos < maxEndPos) { in parse()
3198 int maxEndPos = Math.min(position + effectiveMax, length); in parse() local
3201 while (pos < maxEndPos) { in parse()
/dports/java/openjdk15/jdk15u-jdk-15.0.6-1-1/src/java.base/share/classes/java/time/format/
H A DDateTimeFormatterBuilder.java2808 int maxEndPos = Math.min(pos + effMaxWidth, length); in parse() local
2809 while (pos < maxEndPos) { in parse()
3196 int maxEndPos = Math.min(position + effectiveMax, length); in parse() local
3199 while (pos < maxEndPos) { in parse()
/dports/java/openjdk14/jdk14u-jdk-14.0.2-12-1/src/java.base/share/classes/java/time/format/
H A DDateTimeFormatterBuilder.java2808 int maxEndPos = Math.min(pos + effMaxWidth, length); in parse() local
2809 while (pos < maxEndPos) { in parse()
3196 int maxEndPos = Math.min(position + effectiveMax, length); in parse() local
3199 while (pos < maxEndPos) { in parse()
/dports/biology/seqan1/seqan-1.3.1/apps/splazers/
H A Drazers_spliced.h1938 …TGPos maxEndPos = (*it).i2.gEnd + length(read)-2*options.minMatchLen + static_cast<TGPos>(floor(op… in mapSplicedReads() local
1939 if(maxEndPos > length(genome)) maxEndPos = length(genome); in mapSplicedReads()
1941 infix(genome, (*it).i2.gBegin, maxEndPos), in mapSplicedReads()
/dports/java/openjdk16/jdk16u-jdk-16.0.2-7-1/src/java.base/share/classes/java/time/format/
H A DDateTimeFormatterBuilder.java2867 int maxEndPos = Math.min(pos + effMaxWidth, length); in parse() local
2868 while (pos < maxEndPos) { in parse()
3255 int maxEndPos = Math.min(position + effectiveMax, length); in parse() local
3258 while (pos < maxEndPos) { in parse()
/dports/java/openjdk17/jdk17u-jdk-17.0.1-12-1/src/java.base/share/classes/java/time/format/
H A DDateTimeFormatterBuilder.java2867 int maxEndPos = Math.min(pos + effMaxWidth, length); in parse() local
2868 while (pos < maxEndPos) { in parse()
3255 int maxEndPos = Math.min(position + effectiveMax, length); in parse() local
3258 while (pos < maxEndPos) { in parse()
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/splazers/
H A Drazers_spliced.h2588 TGPos maxEndPos = (*it).i2.gEnd + extensionOffset; in mapSplicedReads() local
2589 if(maxEndPos > length(genome)) maxEndPos = length(genome); in mapSplicedReads()
2592 infix(genome, (*it).i2.gBegin, maxEndPos), in mapSplicedReads()
/dports/www/dojo/dojo-release-1.12.2/dojox/gantt/
H A DGanttChart.js.map7 …addDayInPanelTime","newHourRow","addHourInPanelTime","adjustPanelTime","maxEndPos","map","left","o…