Searched refs:maxalleles (Results 1 – 13 of 13) sorted by relevance
/dports/biology/migrate/migrate-3.6.11/src/ |
H A D | data.c | 169 myfree(data->maxalleles); in destroy_data() 379 data->maxalleles[pop] = 4; in get_new_data() 494 data->maxalleles[pop] = 4; in get_data() 2225 long *maxalleles; in print_spectra() local 2322 for(a=0; a < maxalleles[locus]; a++) in print_spectra() 2327 for(a=0; a < maxalleles[locus]; a++) in print_spectra() 2340 for(a=0; a < maxalleles[locus]; a++) in print_spectra() 2369 for(a=0; a < maxalleles[locus]; a++) in print_spectra() 2425 for(a=0;a<maxalleles[locus];a++) in print_spectra() 2470 myfree(maxalleles); in print_spectra() [all …]
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H A D | pretty.h | 61 …q, MYREAL ** total, MYREAL *grandtotal, MYREAL *avghet, MYREAL avghet1, long * maxalleles);
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H A D | tree.c | 283 world->data->freq = 1. / (data->maxalleles[locus]); in buildtree() 339 world->data->maxalleles[locus] = XBROWN_SIZE; in buildtree() 733 for (a = 0; a < world->data->maxalleles[locus]; a++) in pseudotreelikelihood() 904 long smax = proposal->world->data->maxalleles[locus]; in pseudonu_micro() 2080 for(iu=0;iu<data->maxalleles[locus]; iu++) in make_alleles() 2106 for(iu=0;iu<data->maxalleles[locus]; iu++) in make_alleles() 2180 world->data->maxalleles[locus] = data->maxalleles[locus] = smax; in make_microsatellites() 2213 for(iu=0;iu<data->maxalleles[locus]; iu++) in make_microsatellites() 2242 for(iu=0;iu<data->maxalleles[locus]; iu++) in make_microsatellites() 2697 long mal = world->data->maxalleles[locus]; in nuview_allele() [all …]
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H A D | mutationmodel.c | 35 return world->data->maxalleles[world->locus]; in get_states()
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H A D | migration.h | 279 long *maxalleles; //!< maximal number of alleles in dataset member 1033 long *maxalleles; member
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H A D | mcmc1.c | 502 long mal = world->data->maxalleles[world->locus]; in new_proposal() 594 long mal = world->data->maxalleles[world->locus]; in set_new_proposal() 1593 const long mal = (*proposal)->world->data->maxalleles[(*proposal)->world->locus]; in reset_proposal()
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H A D | mcmc2.c | 1504 long *maxalleles = proposal->world->data->maxalleles; in copy_x() local 1519 memcpy (xx1.a, xx2.a, sizeof (MYREAL) * maxalleles[locus]); in copy_x()
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H A D | pretty.c | 6124 …AL ***freq, MYREAL ** total, MYREAL *grandtotal, MYREAL *avghet, MYREAL avghet1, long * maxalleles) in pdf_print_spectra() argument 6160 if(mostalleles < maxalleles[locus]) in pdf_print_spectra() 6161 mostalleles = maxalleles[locus]; in pdf_print_spectra() 6176 for(a=0; a < maxalleles[locus]; a++) in pdf_print_spectra() 6206 sprintf(elements[a][pop1+1],"%li",(long) maxalleles[locus]); in pdf_print_spectra() 6219 for(a=0;a<maxalleles[locus];a++) in pdf_print_spectra() 6231 …pdf_table2(55., &page_height, data->numpop+2,maxalleles[locus]+3, header, elements, NULL, 2, 10.0); in pdf_print_spectra()
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H A D | world.c | 497 wdata->maxalleles = (long *) mycalloc (2 * data->loci, sizeof (long)); in fill_worlddata() 498 memcpy (wdata->maxalleles, data->maxalleles, in fill_worlddata() 500 wdata->seq[0]->sites = wdata->maxalleles + data->loci; in fill_worlddata() 1564 myfree(world->data->maxalleles); // frees also data->sites in free_world()
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H A D | migrate_mpi.c | 2056 data->maxalleles[pop] = XBROWN_SIZE; in unpack_databuffer() 2061 data->maxalleles[pop] = options->micro_stepnum; in unpack_databuffer()
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/dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/phylip/src/ |
H A D | SeqBootAdapter.cpp | 96 maxalleles = 1; in generateSequencesFromAlignment()
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H A D | seqboot.cpp | 39 long loci, maxalleles, groups, variable 118 maxalleles = 1; in seqboot_inputnumbers() 129 if (alleles[i] > maxalleles) in seqboot_inputnumbers() 130 maxalleles = alleles[i]; in seqboot_inputnumbers() 137 maxalleles--; in seqboot_inputnumbers()
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H A D | seqboot.h | 83 extern long sites, loci, maxalleles, groups,
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