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Searched refs:maxalleles (Results 1 – 13 of 13) sorted by relevance

/dports/biology/migrate/migrate-3.6.11/src/
H A Ddata.c169 myfree(data->maxalleles); in destroy_data()
379 data->maxalleles[pop] = 4; in get_new_data()
494 data->maxalleles[pop] = 4; in get_data()
2225 long *maxalleles; in print_spectra() local
2322 for(a=0; a < maxalleles[locus]; a++) in print_spectra()
2327 for(a=0; a < maxalleles[locus]; a++) in print_spectra()
2340 for(a=0; a < maxalleles[locus]; a++) in print_spectra()
2369 for(a=0; a < maxalleles[locus]; a++) in print_spectra()
2425 for(a=0;a<maxalleles[locus];a++) in print_spectra()
2470 myfree(maxalleles); in print_spectra()
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H A Dpretty.h61 …q, MYREAL ** total, MYREAL *grandtotal, MYREAL *avghet, MYREAL avghet1, long * maxalleles);
H A Dtree.c283 world->data->freq = 1. / (data->maxalleles[locus]); in buildtree()
339 world->data->maxalleles[locus] = XBROWN_SIZE; in buildtree()
733 for (a = 0; a < world->data->maxalleles[locus]; a++) in pseudotreelikelihood()
904 long smax = proposal->world->data->maxalleles[locus]; in pseudonu_micro()
2080 for(iu=0;iu<data->maxalleles[locus]; iu++) in make_alleles()
2106 for(iu=0;iu<data->maxalleles[locus]; iu++) in make_alleles()
2180 world->data->maxalleles[locus] = data->maxalleles[locus] = smax; in make_microsatellites()
2213 for(iu=0;iu<data->maxalleles[locus]; iu++) in make_microsatellites()
2242 for(iu=0;iu<data->maxalleles[locus]; iu++) in make_microsatellites()
2697 long mal = world->data->maxalleles[locus]; in nuview_allele()
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H A Dmutationmodel.c35 return world->data->maxalleles[world->locus]; in get_states()
H A Dmigration.h279 long *maxalleles; //!< maximal number of alleles in dataset member
1033 long *maxalleles; member
H A Dmcmc1.c502 long mal = world->data->maxalleles[world->locus]; in new_proposal()
594 long mal = world->data->maxalleles[world->locus]; in set_new_proposal()
1593 const long mal = (*proposal)->world->data->maxalleles[(*proposal)->world->locus]; in reset_proposal()
H A Dmcmc2.c1504 long *maxalleles = proposal->world->data->maxalleles; in copy_x() local
1519 memcpy (xx1.a, xx2.a, sizeof (MYREAL) * maxalleles[locus]); in copy_x()
H A Dpretty.c6124 …AL ***freq, MYREAL ** total, MYREAL *grandtotal, MYREAL *avghet, MYREAL avghet1, long * maxalleles) in pdf_print_spectra() argument
6160 if(mostalleles < maxalleles[locus]) in pdf_print_spectra()
6161 mostalleles = maxalleles[locus]; in pdf_print_spectra()
6176 for(a=0; a < maxalleles[locus]; a++) in pdf_print_spectra()
6206 sprintf(elements[a][pop1+1],"%li",(long) maxalleles[locus]); in pdf_print_spectra()
6219 for(a=0;a<maxalleles[locus];a++) in pdf_print_spectra()
6231 …pdf_table2(55., &page_height, data->numpop+2,maxalleles[locus]+3, header, elements, NULL, 2, 10.0); in pdf_print_spectra()
H A Dworld.c497 wdata->maxalleles = (long *) mycalloc (2 * data->loci, sizeof (long)); in fill_worlddata()
498 memcpy (wdata->maxalleles, data->maxalleles, in fill_worlddata()
500 wdata->seq[0]->sites = wdata->maxalleles + data->loci; in fill_worlddata()
1564 myfree(world->data->maxalleles); // frees also data->sites in free_world()
H A Dmigrate_mpi.c2056 data->maxalleles[pop] = XBROWN_SIZE; in unpack_databuffer()
2061 data->maxalleles[pop] = options->micro_stepnum; in unpack_databuffer()
/dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/phylip/src/
H A DSeqBootAdapter.cpp96 maxalleles = 1; in generateSequencesFromAlignment()
H A Dseqboot.cpp39 long loci, maxalleles, groups, variable
118 maxalleles = 1; in seqboot_inputnumbers()
129 if (alleles[i] > maxalleles) in seqboot_inputnumbers()
130 maxalleles = alleles[i]; in seqboot_inputnumbers()
137 maxalleles--; in seqboot_inputnumbers()
H A Dseqboot.h83 extern long sites, loci, maxalleles, groups,