Home
last modified time | relevance | path

Searched refs:maxnconsecutive (Results 1 – 4 of 4) sorted by relevance

/dports/biology/gmap/gmap-2020-09-12/src/
H A Doligoindex_hr.h129 int *totalpositions, bool *oned_matrix_p, int *maxnconsecutive,
H A Dstage2.c5839 int maxnconsecutive; in Stage2_scan() local
5870 maxnconsecutive = 0; in Stage2_scan()
6570 int maxnconsecutive; in Stage2_compute() local
6641 maxnconsecutive = 0; in Stage2_compute()
6800 List_length(diagonals),nunique,maxnconsecutive); in Stage2_compute()
7088 int maxnconsecutive; in Stage2_compute_one() local
7104 maxnconsecutive = 0; in Stage2_compute_one()
7260 int maxnconsecutive; in Stage2_compute_starts() local
7276 maxnconsecutive = 0; in Stage2_compute_starts()
7454 int maxnconsecutive; in Stage2_compute_ends() local
[all …]
H A Doligoindex_hr.c34142 int *totalpositions, bool *oned_matrix_p, int *maxnconsecutive, in Oligoindex_get_mappings() argument
34307 if (ptr->best_nconsecutive > *maxnconsecutive) { in Oligoindex_get_mappings()
34308 *maxnconsecutive = ptr->best_nconsecutive; in Oligoindex_get_mappings()
/dports/biology/gmap/gmap-2020-09-12/
H A DChangeLog21489 Using both maxnconsecutive and pct_coverage to decide whether to continue