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Searched refs:maxtrav (Results 1 – 5 of 5) sorted by relevance

/dports/biology/iqtree/IQ-TREE-2.0.6/pll/
H A DsearchAlgo.c1029 if (maxtrav < 1 || mintrav > maxtrav) return (0); in rearrangeBIG()
1063 mintrav, maxtrav); in rearrangeBIG()
1107 mintrav2 , maxtrav); in rearrangeBIG()
1162 maxtrav = tr->mxtips - 3; in treeOptimizeRapid()
2304 if (maxtrav < 1 || mintrav > maxtrav) return (PLL_FALSE); in pllTestSPR()
2557 if (maxtrav) in pllTraverseNNI()
2600 if (maxtrav) in pllSearchNNI()
2947 maxtrav = 5; in determineRearrangementSetting()
2949 bestTrav = maxtrav = 5; in determineRearrangementSetting()
2998 bestTrav = maxtrav; in determineRearrangementSetting()
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H A DfastDNAparsimony.c1267 if (((q->number > tr->mxtips)) && ((--maxtrav > 0) || doAll)) in addTraverseParsimony()
1269 addTraverseParsimony(tr, pr, p, q->next->back, mintrav, maxtrav, doAll, saveBranches); in addTraverseParsimony()
1270 addTraverseParsimony(tr, pr, p, q->next->next->back, mintrav, maxtrav, doAll, saveBranches); in addTraverseParsimony()
1332 if (maxtrav > tr->ntips - 3) in rearrangeParsimony()
1333 maxtrav = tr->ntips - 3; in rearrangeParsimony()
1337 if(maxtrav < mintrav) in rearrangeParsimony()
1366 addTraverseParsimony(tr, pr, p, p1->next->back, mintrav, maxtrav, doAll, PLL_FALSE); in rearrangeParsimony()
1372 addTraverseParsimony(tr, pr, p, p2->next->back, mintrav, maxtrav, doAll, PLL_FALSE); in rearrangeParsimony()
1384 if ((q->number > tr->mxtips) && (maxtrav > 0) && doQ) in rearrangeParsimony()
1409 addTraverseParsimony(tr, pr, q, q1->next->back, mintrav2 , maxtrav, doAll, PLL_FALSE); in rearrangeParsimony()
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H A Dpll.h1044 int maxtrav; member
1439 int maxtrav; member
1661 …* tr, partitionList * pr, int rearrangeType, nodeptr p, int mintrav, int maxtrav, pllRearrangeList…
H A DpllInternal.h75 …TraverseBIG ( pllInstance *tr, partitionList *pr, nodeptr p, nodeptr q, int mintrav, int maxtrav );
76 extern int rearrangeBIG ( pllInstance *tr, partitionList *pr, nodeptr p, int mintrav, int maxtrav );
/dports/biology/fastdnaml/fastDNAml_1.2.2/source/
H A DfastDNAml.c3129 if (maxtrav < 1 || mintrav > maxtrav) return tested; in rearrange()
3173 if (! q->tip && maxtrav > 1) { in rearrange()
3276 if (maxtrav > tr->ntips - 3) maxtrav = tr->ntips - 3; in optimize()
3277 if (maxtrav <= tr->opt_level) return TRUE; in optimize()
3280 (maxtrav == 1) ? "local" : in optimize()
3300 (void) setOptLevel(bt, maxtrav); in optimize()
3309 } while (maxtrav > tr->opt_level); in optimize()
4643 int i, j, k, nextsp, newsp, maxtrav, tested; in makeDenovoTree() local
4703 if (maxtrav > tr->ntips - 3) maxtrav = tr->ntips - 3; in makeDenovoTree()
4705 if (tr->opt_level >= maxtrav) { in makeDenovoTree()
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