Searched refs:maxtrav (Results 1 – 5 of 5) sorted by relevance
/dports/biology/iqtree/IQ-TREE-2.0.6/pll/ |
H A D | searchAlgo.c | 1029 if (maxtrav < 1 || mintrav > maxtrav) return (0); in rearrangeBIG() 1063 mintrav, maxtrav); in rearrangeBIG() 1107 mintrav2 , maxtrav); in rearrangeBIG() 1162 maxtrav = tr->mxtips - 3; in treeOptimizeRapid() 2304 if (maxtrav < 1 || mintrav > maxtrav) return (PLL_FALSE); in pllTestSPR() 2557 if (maxtrav) in pllTraverseNNI() 2600 if (maxtrav) in pllSearchNNI() 2947 maxtrav = 5; in determineRearrangementSetting() 2949 bestTrav = maxtrav = 5; in determineRearrangementSetting() 2998 bestTrav = maxtrav; in determineRearrangementSetting() [all …]
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H A D | fastDNAparsimony.c | 1267 if (((q->number > tr->mxtips)) && ((--maxtrav > 0) || doAll)) in addTraverseParsimony() 1269 addTraverseParsimony(tr, pr, p, q->next->back, mintrav, maxtrav, doAll, saveBranches); in addTraverseParsimony() 1270 addTraverseParsimony(tr, pr, p, q->next->next->back, mintrav, maxtrav, doAll, saveBranches); in addTraverseParsimony() 1332 if (maxtrav > tr->ntips - 3) in rearrangeParsimony() 1333 maxtrav = tr->ntips - 3; in rearrangeParsimony() 1337 if(maxtrav < mintrav) in rearrangeParsimony() 1366 addTraverseParsimony(tr, pr, p, p1->next->back, mintrav, maxtrav, doAll, PLL_FALSE); in rearrangeParsimony() 1372 addTraverseParsimony(tr, pr, p, p2->next->back, mintrav, maxtrav, doAll, PLL_FALSE); in rearrangeParsimony() 1384 if ((q->number > tr->mxtips) && (maxtrav > 0) && doQ) in rearrangeParsimony() 1409 addTraverseParsimony(tr, pr, q, q1->next->back, mintrav2 , maxtrav, doAll, PLL_FALSE); in rearrangeParsimony() [all …]
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H A D | pll.h | 1044 int maxtrav; member 1439 int maxtrav; member 1661 …* tr, partitionList * pr, int rearrangeType, nodeptr p, int mintrav, int maxtrav, pllRearrangeList…
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H A D | pllInternal.h | 75 …TraverseBIG ( pllInstance *tr, partitionList *pr, nodeptr p, nodeptr q, int mintrav, int maxtrav ); 76 extern int rearrangeBIG ( pllInstance *tr, partitionList *pr, nodeptr p, int mintrav, int maxtrav );
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/dports/biology/fastdnaml/fastDNAml_1.2.2/source/ |
H A D | fastDNAml.c | 3129 if (maxtrav < 1 || mintrav > maxtrav) return tested; in rearrange() 3173 if (! q->tip && maxtrav > 1) { in rearrange() 3276 if (maxtrav > tr->ntips - 3) maxtrav = tr->ntips - 3; in optimize() 3277 if (maxtrav <= tr->opt_level) return TRUE; in optimize() 3280 (maxtrav == 1) ? "local" : in optimize() 3300 (void) setOptLevel(bt, maxtrav); in optimize() 3309 } while (maxtrav > tr->opt_level); in optimize() 4643 int i, j, k, nextsp, newsp, maxtrav, tested; in makeDenovoTree() local 4703 if (maxtrav > tr->ntips - 3) maxtrav = tr->ntips - 3; in makeDenovoTree() 4705 if (tr->opt_level >= maxtrav) { in makeDenovoTree() [all …]
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