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Searched refs:mean_rsq (Results 1 – 3 of 3) sorted by relevance

/dports/biology/gcta/gcta_1.26.0_src/
H A Dld.cpp285 …eigenVector mean_rsq = eigenVector::Zero(m), snp_num = eigenVector::Zero(m), max_rsq = eigenVector… in calcu_mean_rsq() local
286 calcu_ld_blk(brk_pnt1, brk_pnt3, mean_rsq, snp_num, max_rsq, false, rsq_cutoff, dominance_flag); in calcu_mean_rsq()
299 ldscore = 1.0 + mean_rsq[i] * snp_num[i]; in calcu_mean_rsq()
431 …mean_rsq[k] = (mean_rsq[k] * snp_num[k] + mean_rsq_sub[j] * rsq_size[j]) / (snp_num[k] + rsq_size[… in calcu_ld_blk()
437 mean_rsq[k] = mean_rsq_sub[j]; in calcu_ld_blk()
557 vector<eigenVector> mean_rsq(set_num), snp_num(set_num), max_rsq(set_num); in calcu_mean_rsq_multiSet() local
559 mean_rsq[i] = eigenVector::Zero(m); in calcu_mean_rsq_multiSet()
580 ldscore = 1.0 + (mean_rsq[j])[i] * (snp_num[j])[i]; in calcu_mean_rsq_multiSet()
581 o_mrsq << " " << (mean_rsq[j])[i] << " " << (snp_num[j])[i] << " " << (max_rsq[j])[i]; in calcu_mean_rsq_multiSet()
670 …(mean_rsq[s])[k] = ((mean_rsq[s])[k] * (snp_num[s])[k] + mean_rsq_sub[j] * rsq_size[j]) / ((snp_nu… in calcu_ld_blk_multiSet()
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H A Dmkl.cpp574 eigenVector mean_rsq = eigenVector::Zero(m); in calcu_mean_rsq_mkl() local
577 …calcu_ld_blk_mkl(_geno_mkl, sd_SNP, brk_pnt1, brk_pnt3, mean_rsq, snp_num, max_rsq, false, rsq_cut… in calcu_mean_rsq_mkl()
578 …if (brk_pnt2.size() > 1) calcu_ld_blk_mkl(_geno_mkl, sd_SNP, brk_pnt2, brk_pnt3, mean_rsq, snp_num… in calcu_mean_rsq_mkl()
582 …sq << _snp_name[_include[i]] << " " << 0.5 * _mu[_include[i]] << " " << mean_rsq[i] << " " << snp_… in calcu_mean_rsq_mkl()
606 …double> &ssx, vector<int> &brk_pnt, vector<int> &brk_pnt3, eigenVector &mean_rsq, eigenVector &snp… in calcu_ld_blk_mkl() argument
666 …mean_rsq[k] = (mean_rsq[k] * snp_num[k] + mean_rsq_sub[j] * rsq_size[j]) / (snp_num[k] + rsq_size[… in calcu_ld_blk_mkl()
672 mean_rsq[k] = mean_rsq_sub[j]; in calcu_ld_blk_mkl()
H A Dgcta.h292 …void calcu_ld_blk(vector<int> &brk_pnt, vector<int> &brk_pnt3, eigenVector &mean_rsq, eigenVector …
297 …<int> &brk_pnt3, vector< vector<bool> > &set_flag, vector<eigenVector> &mean_rsq, vector<eigenVect…
338 …double> &ssx, vector<int> &brk_pnt, vector<int> &brk_pnt3, eigenVector &mean_rsq, eigenVector &snp…