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Searched refs:mean_rsq_sub (Results 1 – 3 of 3) sorted by relevance

/dports/biology/gcta/gcta_1.26.0_src/
H A Dld.cpp408 mean_rsq_sub[j] = 0.0; in calcu_ld_blk()
419 else mean_rsq_sub[j] += rsq_sub(j,k); in calcu_ld_blk()
424 if (rsq_size[j] > 0.0) mean_rsq_sub[j] /= rsq_size[j]; in calcu_ld_blk()
437 mean_rsq[k] = mean_rsq_sub[j]; in calcu_ld_blk()
493 mean_rsq_sub[k] = mean_rsq_sub_sub[j]; in calcu_ld_blk_split()
637 eigenVector mean_rsq_sub = eigenVector::Zero(size); in calcu_ld_blk_multiSet() local
647 mean_rsq_sub[j] = 0.0; in calcu_ld_blk_multiSet()
659 else mean_rsq_sub[j] += rsq_sub(j,k); in calcu_ld_blk_multiSet()
664 if (rsq_size[j] > 0.0) mean_rsq_sub[j] /= rsq_size[j]; in calcu_ld_blk_multiSet()
676 (mean_rsq[s])[k] = mean_rsq_sub[j]; in calcu_ld_blk_multiSet()
[all …]
H A Dmkl.cpp630 vector<double> rsq_size(size), mean_rsq_sub(size), max_rsq_sub(size); in calcu_ld_blk_mkl() local
633 …blk_split_mkl(size, size_limit, X_sub, ssx_sub, rsq_cutoff, rsq_size, mean_rsq_sub, max_rsq_sub, s… in calcu_ld_blk_mkl()
640 mean_rsq_sub[j] = 0.0; in calcu_ld_blk_mkl()
652 mean_rsq_sub[j] += rsq_sub[l]; in calcu_ld_blk_mkl()
657 if (rsq_size[j] > 0.0) mean_rsq_sub[j] /= rsq_size[j]; in calcu_ld_blk_mkl()
666 …mean_rsq[k] = (mean_rsq[k] * snp_num[k] + mean_rsq_sub[j] * rsq_size[j]) / (snp_num[k] + rsq_size[… in calcu_ld_blk_mkl()
672 mean_rsq[k] = mean_rsq_sub[j]; in calcu_ld_blk_mkl()
680 …ssx_sub, double rsq_cutoff, vector<double> &rsq_size, vector<double> &mean_rsq_sub, vector<double>… in calcu_ld_blk_split_mkl() argument
740 mean_rsq_sub[k] = mean_rsq_sub_sub[j]; in calcu_ld_blk_split_mkl()
H A Dgcta.h293 …sx_sqrt_i_sub, double rsq_cutoff, eigenVector &rsq_size, eigenVector &mean_rsq_sub, eigenVector &m…
298 …sx_sqrt_i_sub, double rsq_cutoff, eigenVector &rsq_size, eigenVector &mean_rsq_sub, eigenVector &m…
339 …ssx_sub, double rsq_cutoff, vector<double> &rsq_size, vector<double> &mean_rsq_sub, vector<double>…