Searched refs:medianLength (Results 1 – 6 of 6) sorted by relevance
35 public int medianLength(boolean includeDiscarded){ in medianLength() method in ZMW61 int len=medianLength(includeDiscarded); in medianRead()158 int median=medianLength(true); in estimatePasses()
751 private int medianLength(ZMW list){ in medianLength() method in ReformatPacBio.ProcessThread998 final int medianLength=medianLength(reads); in processList() local1003 if(flagLongReads){longReads=flagLongReads(reads, medianLength);} in processList()1006 if(sample==null && r.length()==medianLength){ in processList()
836 final int medianLength=reads.medianLength(true); local844 if(flagLongReads){longReads=flagLongReads(reads, medianLength);}847 if(sample==null && r.length()==medianLength){922 if(r.length()>=veryShortMult*medianLength){r.setDiscarded(true);}924 if(r.length()>=veryShortMult*medianLength){r.setDiscarded(true);}
1705 int medianLength=lengths[lengths.length/2]; in pickBestRepresenative() local1713 float deviation=Tools.absdif(len, medianLength)*1f/(medianLength+1); in pickBestRepresenative()
1746 int medianLength=lengths[lengths.length/2]; in pickBestRepresenative() local1754 float deviation=Tools.absdif(len, medianLength)*1f/(medianLength+1); in pickBestRepresenative()
1675 int medianLength=lengths[lengths.length/2]; in pickBestRepresenative() local1683 float deviation=Tools.absdif(len, medianLength)*1f/(medianLength+1); in pickBestRepresenative()