Home
last modified time | relevance | path

Searched refs:minTandemSize (Results 1 – 4 of 4) sorted by relevance

/dports/biology/ugene/ugene-40.1/src/plugins/repeat_finder/src/
H A DRF_SArray_TandemFinder.cpp299 quint32 suffixOffset = qMax(1, (settings.minTandemSize - prefixLength) / diff); in run()
318 … unsigned suffixOffset = qMax(1, signed(settings.minTandemSize - prefixLength) / diff); in run()
373 … int tandemMinSize = qMax(settings.minTandemSize, settings.minRepeatCount * tandem.repeatLen); in checkAndSpreadTandem()
421 … int tandemMinSize = qMax(settings.minTandemSize, settings.minRepeatCount * tandem.repeatLen); in checkAndSpreadTandem_bv()
490 …unsigned suffixOffset = static_cast<unsigned>(qMax(1, signed(settings.minTandemSize - prefixLength… in run()
566 int tandemMinSize = qMax(settings.minTandemSize, 2 * tandem.repeatLen); in checkAndSpreadTandem_bv()
H A DRF_SArray_TandemFinder.h61 …: minPeriod(1), maxPeriod(INT_MAX), minTandemSize(DEFAULT_MIN_TANDEM_SIZE), minRepeatCount(DEFAULT… in FindTandemsTaskSettings()
67 int minTandemSize; variable
H A DTandemQuery.cpp76 …settings.minTandemSize = cfg->getParameter(MIN_TANDEM_SIZE_ATTRIBUTE)->getAttributeValueWithoutScr… in getAlgorithmTask()
188 …w Attribute(minTandemSizeDescriptor, BaseTypes::NUM_TYPE(), false, defaultSettings.minTandemSize)); in QDTandemActorPrototype()
H A DFindTandemsDialog.cpp223 …settings.minTandemSize = qMax(FindTandemsTaskSettings::DEFAULT_MIN_TANDEM_SIZE, minTandemSizeBox->… in accept()