Searched refs:minTandemSize (Results 1 – 4 of 4) sorted by relevance
/dports/biology/ugene/ugene-40.1/src/plugins/repeat_finder/src/ |
H A D | RF_SArray_TandemFinder.cpp | 299 quint32 suffixOffset = qMax(1, (settings.minTandemSize - prefixLength) / diff); in run() 318 … unsigned suffixOffset = qMax(1, signed(settings.minTandemSize - prefixLength) / diff); in run() 373 … int tandemMinSize = qMax(settings.minTandemSize, settings.minRepeatCount * tandem.repeatLen); in checkAndSpreadTandem() 421 … int tandemMinSize = qMax(settings.minTandemSize, settings.minRepeatCount * tandem.repeatLen); in checkAndSpreadTandem_bv() 490 …unsigned suffixOffset = static_cast<unsigned>(qMax(1, signed(settings.minTandemSize - prefixLength… in run() 566 int tandemMinSize = qMax(settings.minTandemSize, 2 * tandem.repeatLen); in checkAndSpreadTandem_bv()
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H A D | RF_SArray_TandemFinder.h | 61 …: minPeriod(1), maxPeriod(INT_MAX), minTandemSize(DEFAULT_MIN_TANDEM_SIZE), minRepeatCount(DEFAULT… in FindTandemsTaskSettings() 67 int minTandemSize; variable
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H A D | TandemQuery.cpp | 76 …settings.minTandemSize = cfg->getParameter(MIN_TANDEM_SIZE_ATTRIBUTE)->getAttributeValueWithoutScr… in getAlgorithmTask() 188 …w Attribute(minTandemSizeDescriptor, BaseTypes::NUM_TYPE(), false, defaultSettings.minTandemSize)); in QDTandemActorPrototype()
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H A D | FindTandemsDialog.cpp | 223 …settings.minTandemSize = qMax(FindTandemsTaskSettings::DEFAULT_MIN_TANDEM_SIZE, minTandemSizeBox->… in accept()
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